Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 FOXO1B-201ENST00000504678 1527 ntBASIC16.72■□□□□ 0.27
LHX3Q9UBR4 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC16.72■□□□□ 0.27
LHX3Q9UBR4 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC16.72■□□□□ 0.27
LHX3Q9UBR4 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
LHX3Q9UBR4 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
LHX3Q9UBR4 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
LHX3Q9UBR4 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
LHX3Q9UBR4 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
LHX3Q9UBR4 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
LHX3Q9UBR4 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC16.72■□□□□ 0.27
LHX3Q9UBR4 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
LHX3Q9UBR4 CBR1-202ENST00000399191 838 ntTSL 3 BASIC16.72■□□□□ 0.27
LHX3Q9UBR4 FAM58DP-201ENST00000428076 619 ntBASIC16.72■□□□□ 0.27
LHX3Q9UBR4 AC005237.2-201ENST00000434368 219 ntBASIC16.72■□□□□ 0.27
LHX3Q9UBR4 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
LHX3Q9UBR4 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC16.72■□□□□ 0.27
LHX3Q9UBR4 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC16.72■□□□□ 0.27
LHX3Q9UBR4 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC16.72■□□□□ 0.27
LHX3Q9UBR4 KRT8P23-201ENST00000560090 1207 ntBASIC16.72■□□□□ 0.27
LHX3Q9UBR4 QPRT-203ENST00000562473 579 ntTSL 3 BASIC16.72■□□□□ 0.27
LHX3Q9UBR4 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC16.72■□□□□ 0.27
LHX3Q9UBR4 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC16.72■□□□□ 0.27
LHX3Q9UBR4 NKG7-205ENST00000600427 520 ntTSL 3 BASIC16.72■□□□□ 0.27
LHX3Q9UBR4 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC16.72■□□□□ 0.27
LHX3Q9UBR4 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC16.72■□□□□ 0.27
LHX3Q9UBR4 AC084121.4-201ENST00000641598 221 ntBASIC16.72■□□□□ 0.27
LHX3Q9UBR4 AF228730.8-201ENST00000642140 221 ntBASIC16.72■□□□□ 0.27
LHX3Q9UBR4 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC16.72■□□□□ 0.27
LHX3Q9UBR4 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
LHX3Q9UBR4 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC16.72■□□□□ 0.27
LHX3Q9UBR4 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
LHX3Q9UBR4 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
LHX3Q9UBR4 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC16.72■□□□□ 0.27
LHX3Q9UBR4 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
LHX3Q9UBR4 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
LHX3Q9UBR4 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC16.72■□□□□ 0.27
LHX3Q9UBR4 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
LHX3Q9UBR4 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
LHX3Q9UBR4 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
LHX3Q9UBR4 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC16.71■□□□□ 0.27
LHX3Q9UBR4 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
LHX3Q9UBR4 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
LHX3Q9UBR4 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC16.71■□□□□ 0.27
LHX3Q9UBR4 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
LHX3Q9UBR4 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
LHX3Q9UBR4 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC16.71■□□□□ 0.27
LHX3Q9UBR4 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC16.71■□□□□ 0.27
LHX3Q9UBR4 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
LHX3Q9UBR4 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC16.71■□□□□ 0.27
LHX3Q9UBR4 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
LHX3Q9UBR4 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC16.71■□□□□ 0.27
LHX3Q9UBR4 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC16.71■□□□□ 0.27
LHX3Q9UBR4 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
LHX3Q9UBR4 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
LHX3Q9UBR4 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
LHX3Q9UBR4 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC16.71■□□□□ 0.27
LHX3Q9UBR4 MIR346-201ENST00000362234 95 ntBASIC16.71■□□□□ 0.27
LHX3Q9UBR4 PTMS-202ENST00000389462 773 ntTSL 2 BASIC16.71■□□□□ 0.27
LHX3Q9UBR4 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC16.71■□□□□ 0.27
LHX3Q9UBR4 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC16.71■□□□□ 0.27
LHX3Q9UBR4 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC16.71■□□□□ 0.27
LHX3Q9UBR4 AC142381.1-201ENST00000426099 345 ntBASIC16.71■□□□□ 0.27
LHX3Q9UBR4 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
LHX3Q9UBR4 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC16.71■□□□□ 0.27
LHX3Q9UBR4 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
LHX3Q9UBR4 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC16.71■□□□□ 0.27
LHX3Q9UBR4 IGHV3-62-201ENST00000520057 340 ntBASIC16.71■□□□□ 0.27
LHX3Q9UBR4 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC16.71■□□□□ 0.27
LHX3Q9UBR4 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC16.71■□□□□ 0.27
LHX3Q9UBR4 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC16.71■□□□□ 0.27
LHX3Q9UBR4 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
LHX3Q9UBR4 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
LHX3Q9UBR4 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
LHX3Q9UBR4 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC16.71■□□□□ 0.27
LHX3Q9UBR4 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC16.71■□□□□ 0.27
LHX3Q9UBR4 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
LHX3Q9UBR4 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC16.71■□□□□ 0.27
LHX3Q9UBR4 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
LHX3Q9UBR4 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC16.71■□□□□ 0.26
LHX3Q9UBR4 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.26
LHX3Q9UBR4 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
LHX3Q9UBR4 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC16.7■□□□□ 0.26
LHX3Q9UBR4 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
LHX3Q9UBR4 UXT-AS1-201ENST00000590504 1525 ntBASIC16.7■□□□□ 0.26
LHX3Q9UBR4 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC16.7■□□□□ 0.26
LHX3Q9UBR4 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
LHX3Q9UBR4 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
LHX3Q9UBR4 ALOX12P2-203ENST00000570921 1945 ntBASIC16.7■□□□□ 0.26
LHX3Q9UBR4 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
LHX3Q9UBR4 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
LHX3Q9UBR4 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
LHX3Q9UBR4 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
LHX3Q9UBR4 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
LHX3Q9UBR4 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC16.7■□□□□ 0.26
LHX3Q9UBR4 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
LHX3Q9UBR4 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
LHX3Q9UBR4 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
LHX3Q9UBR4 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
LHX3Q9UBR4 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
LHX3Q9UBR4 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms