Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC14.44□□□□□ -0.1
CHMP1AQ9HD42 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CHMP1AQ9HD42 HELZ2-204ENST00000467148 8064 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CHMP1AQ9HD42 TCAF1-205ENST00000479870 5733 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
CHMP1AQ9HD42 EYA4-205ENST00000430974 2364 ntTSL 2 BASIC14.44□□□□□ -0.1
CHMP1AQ9HD42 AL353593.2-201ENST00000602529 1483 ntBASIC14.44□□□□□ -0.1
CHMP1AQ9HD42 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CHMP1AQ9HD42 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CHMP1AQ9HD42 AIFM2-201ENST00000307864 3243 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CHMP1AQ9HD42 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CHMP1AQ9HD42 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CHMP1AQ9HD42 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
CHMP1AQ9HD42 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CHMP1AQ9HD42 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC14.43□□□□□ -0.1
CHMP1AQ9HD42 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CHMP1AQ9HD42 ELP1-201ENST00000374647 5905 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CHMP1AQ9HD42 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC14.43□□□□□ -0.1
CHMP1AQ9HD42 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CHMP1AQ9HD42 SRD5A2-201ENST00000622030 4648 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CHMP1AQ9HD42 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
CHMP1AQ9HD42 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CHMP1AQ9HD42 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CHMP1AQ9HD42 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CHMP1AQ9HD42 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
CHMP1AQ9HD42 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CHMP1AQ9HD42 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC14.43□□□□□ -0.1
CHMP1AQ9HD42 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
CHMP1AQ9HD42 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CHMP1AQ9HD42 CD9-202ENST00000382515 1229 ntTSL 5 BASIC14.43□□□□□ -0.1
CHMP1AQ9HD42 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC14.43□□□□□ -0.1
CHMP1AQ9HD42 AL845331.1-201ENST00000424978 1190 ntBASIC14.43□□□□□ -0.1
CHMP1AQ9HD42 AC246785.2-201ENST00000432512 513 ntBASIC14.43□□□□□ -0.1
CHMP1AQ9HD42 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CHMP1AQ9HD42 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CHMP1AQ9HD42 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CHMP1AQ9HD42 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC14.43□□□□□ -0.1
CHMP1AQ9HD42 DUX4L26-201ENST00000489078 1255 ntBASIC14.43□□□□□ -0.1
CHMP1AQ9HD42 AP002490.2-201ENST00000524791 560 ntBASIC14.43□□□□□ -0.1
CHMP1AQ9HD42 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC14.43□□□□□ -0.1
CHMP1AQ9HD42 ABR-204ENST00000543210 1049 ntTSL 2 BASIC14.43□□□□□ -0.1
CHMP1AQ9HD42 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CHMP1AQ9HD42 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC14.43□□□□□ -0.1
CHMP1AQ9HD42 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC14.43□□□□□ -0.1
CHMP1AQ9HD42 ABR-217ENST00000572441 563 ntTSL 4 BASIC14.43□□□□□ -0.1
CHMP1AQ9HD42 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC14.43□□□□□ -0.1
CHMP1AQ9HD42 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CHMP1AQ9HD42 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CHMP1AQ9HD42 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC14.43□□□□□ -0.1
CHMP1AQ9HD42 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CHMP1AQ9HD42 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CHMP1AQ9HD42 NCOR2-203ENST00000404621 8520 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
CHMP1AQ9HD42 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
CHMP1AQ9HD42 NOP9-201ENST00000267425 6033 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CHMP1AQ9HD42 TLL1-201ENST00000061240 6708 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CHMP1AQ9HD42 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CHMP1AQ9HD42 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
CHMP1AQ9HD42 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC14.42□□□□□ -0.1
CHMP1AQ9HD42 AKNA-206ENST00000374088 5464 ntAPPRIS P2 TSL 2 BASIC14.42□□□□□ -0.1
CHMP1AQ9HD42 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
CHMP1AQ9HD42 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
CHMP1AQ9HD42 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC14.42□□□□□ -0.1
CHMP1AQ9HD42 SYT13-201ENST00000020926 5144 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CHMP1AQ9HD42 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
CHMP1AQ9HD42 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CHMP1AQ9HD42 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CHMP1AQ9HD42 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CHMP1AQ9HD42 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CHMP1AQ9HD42 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
CHMP1AQ9HD42 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CHMP1AQ9HD42 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CHMP1AQ9HD42 EML1-201ENST00000262233 4535 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CHMP1AQ9HD42 SEZ6L-209ENST00000529632 6534 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
CHMP1AQ9HD42 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
CHMP1AQ9HD42 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
CHMP1AQ9HD42 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CHMP1AQ9HD42 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CHMP1AQ9HD42 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
CHMP1AQ9HD42 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
CHMP1AQ9HD42 MINOS1P3-201ENST00000457048 203 ntBASIC14.42□□□□□ -0.1
CHMP1AQ9HD42 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
CHMP1AQ9HD42 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC14.42□□□□□ -0.1
CHMP1AQ9HD42 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC14.42□□□□□ -0.1
CHMP1AQ9HD42 RN7SL850P-201ENST00000579959 291 ntBASIC14.42□□□□□ -0.1
CHMP1AQ9HD42 AL121672.3-201ENST00000608644 468 ntBASIC14.42□□□□□ -0.1
CHMP1AQ9HD42 AL353801.3-201ENST00000609898 542 ntBASIC14.42□□□□□ -0.1
CHMP1AQ9HD42 AC073592.5-201ENST00000624854 528 ntBASIC14.42□□□□□ -0.1
CHMP1AQ9HD42 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
CHMP1AQ9HD42 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
CHMP1AQ9HD42 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
CHMP1AQ9HD42 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
CHMP1AQ9HD42 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
CHMP1AQ9HD42 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CHMP1AQ9HD42 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CHMP1AQ9HD42 SMAD2-202ENST00000356825 10445 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
CHMP1AQ9HD42 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CHMP1AQ9HD42 AC023824.1-201ENST00000562945 2975 ntBASIC14.42□□□□□ -0.1
CHMP1AQ9HD42 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
CHMP1AQ9HD42 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
CHMP1AQ9HD42 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
CHMP1AQ9HD42 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 87.8 ms