Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC17.06■□□□□ 0.32
TRIM56Q9BRZ2 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TRIM56Q9BRZ2 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TRIM56Q9BRZ2 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
TRIM56Q9BRZ2 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TRIM56Q9BRZ2 LINC00895-201ENST00000629028 1637 ntBASIC17.06■□□□□ 0.32
TRIM56Q9BRZ2 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TRIM56Q9BRZ2 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TRIM56Q9BRZ2 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
TRIM56Q9BRZ2 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
TRIM56Q9BRZ2 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TRIM56Q9BRZ2 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
TRIM56Q9BRZ2 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
TRIM56Q9BRZ2 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC17.05■□□□□ 0.32
TRIM56Q9BRZ2 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
TRIM56Q9BRZ2 KRT8P49-201ENST00000604166 1432 ntBASIC17.05■□□□□ 0.32
TRIM56Q9BRZ2 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TRIM56Q9BRZ2 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
TRIM56Q9BRZ2 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
TRIM56Q9BRZ2 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TRIM56Q9BRZ2 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
TRIM56Q9BRZ2 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
TRIM56Q9BRZ2 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
TRIM56Q9BRZ2 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TRIM56Q9BRZ2 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TRIM56Q9BRZ2 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TRIM56Q9BRZ2 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TRIM56Q9BRZ2 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC17.05■□□□□ 0.32
TRIM56Q9BRZ2 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TRIM56Q9BRZ2 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TRIM56Q9BRZ2 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TRIM56Q9BRZ2 DFFB-203ENST00000341385 572 ntTSL 5 BASIC17.05■□□□□ 0.32
TRIM56Q9BRZ2 RBM17P3-201ENST00000417687 1192 ntBASIC17.05■□□□□ 0.32
TRIM56Q9BRZ2 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC17.05■□□□□ 0.32
TRIM56Q9BRZ2 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC17.05■□□□□ 0.32
TRIM56Q9BRZ2 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC17.05■□□□□ 0.32
TRIM56Q9BRZ2 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC17.05■□□□□ 0.32
TRIM56Q9BRZ2 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC17.05■□□□□ 0.32
TRIM56Q9BRZ2 PRR29-207ENST00000580752 458 ntTSL 3 BASIC17.05■□□□□ 0.32
TRIM56Q9BRZ2 MTDHP4-201ENST00000600287 670 ntBASIC17.05■□□□□ 0.32
TRIM56Q9BRZ2 AC008608.2-201ENST00000606089 416 ntBASIC17.05■□□□□ 0.32
TRIM56Q9BRZ2 AL139424.1-201ENST00000607572 797 ntBASIC17.05■□□□□ 0.32
TRIM56Q9BRZ2 AL139288.1-201ENST00000623748 933 ntBASIC17.05■□□□□ 0.32
TRIM56Q9BRZ2 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC17.05■□□□□ 0.32
TRIM56Q9BRZ2 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
TRIM56Q9BRZ2 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TRIM56Q9BRZ2 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC17.05■□□□□ 0.32
TRIM56Q9BRZ2 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
TRIM56Q9BRZ2 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC17.05■□□□□ 0.32
TRIM56Q9BRZ2 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
TRIM56Q9BRZ2 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC17.05■□□□□ 0.32
TRIM56Q9BRZ2 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TRIM56Q9BRZ2 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TRIM56Q9BRZ2 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC17.05■□□□□ 0.32
TRIM56Q9BRZ2 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC17.05■□□□□ 0.32
TRIM56Q9BRZ2 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TRIM56Q9BRZ2 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
TRIM56Q9BRZ2 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TRIM56Q9BRZ2 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
TRIM56Q9BRZ2 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC17.04■□□□□ 0.32
TRIM56Q9BRZ2 AL671710.1-201ENST00000610245 2349 ntBASIC17.04■□□□□ 0.32
TRIM56Q9BRZ2 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC17.04■□□□□ 0.32
TRIM56Q9BRZ2 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC17.04■□□□□ 0.32
TRIM56Q9BRZ2 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TRIM56Q9BRZ2 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
TRIM56Q9BRZ2 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
TRIM56Q9BRZ2 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC17.04■□□□□ 0.32
TRIM56Q9BRZ2 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
TRIM56Q9BRZ2 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC17.04■□□□□ 0.32
TRIM56Q9BRZ2 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TRIM56Q9BRZ2 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
TRIM56Q9BRZ2 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC17.04■□□□□ 0.32
TRIM56Q9BRZ2 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TRIM56Q9BRZ2 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
TRIM56Q9BRZ2 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
TRIM56Q9BRZ2 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
TRIM56Q9BRZ2 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC17.04■□□□□ 0.32
TRIM56Q9BRZ2 COX5A-202ENST00000562233 441 ntTSL 3 BASIC17.04■□□□□ 0.32
TRIM56Q9BRZ2 RNF151-202ENST00000569210 853 ntTSL 2 BASIC17.04■□□□□ 0.32
TRIM56Q9BRZ2 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC17.04■□□□□ 0.32
TRIM56Q9BRZ2 PAUPAR-201ENST00000630360 2965 ntBASIC17.04■□□□□ 0.32
TRIM56Q9BRZ2 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TRIM56Q9BRZ2 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TRIM56Q9BRZ2 SNX33P1-201ENST00000592116 1762 ntBASIC17.04■□□□□ 0.32
TRIM56Q9BRZ2 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
TRIM56Q9BRZ2 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC17.04■□□□□ 0.32
TRIM56Q9BRZ2 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
TRIM56Q9BRZ2 GCK-209ENST00000616242 2260 ntTSL 5 BASIC17.04■□□□□ 0.32
TRIM56Q9BRZ2 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
TRIM56Q9BRZ2 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TRIM56Q9BRZ2 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TRIM56Q9BRZ2 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC17.04■□□□□ 0.32
TRIM56Q9BRZ2 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC17.03■□□□□ 0.32
TRIM56Q9BRZ2 PAN3-AS1-201ENST00000563843 1351 ntBASIC17.03■□□□□ 0.32
TRIM56Q9BRZ2 AL021920.2-201ENST00000624828 1351 ntBASIC17.03■□□□□ 0.32
TRIM56Q9BRZ2 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
TRIM56Q9BRZ2 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
TRIM56Q9BRZ2 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
TRIM56Q9BRZ2 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
TRIM56Q9BRZ2 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC17.03■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 45.8 ms