Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
LRCH3Q96II8 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
LRCH3Q96II8 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
LRCH3Q96II8 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC17.94■□□□□ 0.46
LRCH3Q96II8 CARTPT-201ENST00000296777 915 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
LRCH3Q96II8 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
LRCH3Q96II8 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
LRCH3Q96II8 ENSA-206ENST00000361631 725 ntTSL 2 BASIC17.94■□□□□ 0.46
LRCH3Q96II8 KNCN-202ENST00000396314 608 ntAPPRIS P3 TSL 4 BASIC17.94■□□□□ 0.46
LRCH3Q96II8 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
LRCH3Q96II8 FAM21FP-201ENST00000426241 1131 ntBASIC17.94■□□□□ 0.46
LRCH3Q96II8 FANCA-204ENST00000534992 1088 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
LRCH3Q96II8 BANF1P1-201ENST00000553684 263 ntBASIC17.94■□□□□ 0.46
LRCH3Q96II8 AC010319.3-201ENST00000597028 470 ntBASIC17.94■□□□□ 0.46
LRCH3Q96II8 LINC01278-203ENST00000608788 820 ntTSL 5 BASIC17.94■□□□□ 0.46
LRCH3Q96II8 LINC01278-207ENST00000610234 555 ntTSL 4 BASIC17.94■□□□□ 0.46
LRCH3Q96II8 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
LRCH3Q96II8 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC17.94■□□□□ 0.46
LRCH3Q96II8 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
LRCH3Q96II8 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
LRCH3Q96II8 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
LRCH3Q96II8 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
LRCH3Q96II8 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC17.94■□□□□ 0.46
LRCH3Q96II8 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
LRCH3Q96II8 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
LRCH3Q96II8 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
LRCH3Q96II8 TEX264-205ENST00000416589 1313 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
LRCH3Q96II8 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
LRCH3Q96II8 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
LRCH3Q96II8 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC17.94■□□□□ 0.46
LRCH3Q96II8 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
LRCH3Q96II8 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
LRCH3Q96II8 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC17.94■□□□□ 0.46
LRCH3Q96II8 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
LRCH3Q96II8 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
LRCH3Q96II8 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
LRCH3Q96II8 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
LRCH3Q96II8 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC17.93■□□□□ 0.46
LRCH3Q96II8 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC17.93■□□□□ 0.46
LRCH3Q96II8 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC17.93■□□□□ 0.46
LRCH3Q96II8 SPAG11B-203ENST00000359758 612 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
LRCH3Q96II8 AGER-203ENST00000375065 665 ntTSL 2 BASIC17.93■□□□□ 0.46
LRCH3Q96II8 HLA-H-201ENST00000383620 1096 ntBASIC17.93■□□□□ 0.46
LRCH3Q96II8 VCPKMT-201ENST00000395859 795 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
LRCH3Q96II8 BTBD6P1-201ENST00000412176 1267 ntBASIC17.93■□□□□ 0.46
LRCH3Q96II8 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC17.93■□□□□ 0.46
LRCH3Q96II8 LINC01248-201ENST00000458264 468 ntTSL 3 BASIC17.93■□□□□ 0.46
LRCH3Q96II8 LAMA5-AS1-203ENST00000478167 690 ntTSL 3 BASIC17.93■□□□□ 0.46
LRCH3Q96II8 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC17.93■□□□□ 0.46
LRCH3Q96II8 KRT18P34-201ENST00000488218 1270 ntBASIC17.93■□□□□ 0.46
LRCH3Q96II8 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC17.93■□□□□ 0.46
LRCH3Q96II8 MIR4722-201ENST00000578292 60 ntBASIC17.93■□□□□ 0.46
LRCH3Q96II8 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC17.93■□□□□ 0.46
LRCH3Q96II8 AL133215.2-201ENST00000609242 977 ntBASIC17.93■□□□□ 0.46
LRCH3Q96II8 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC17.93■□□□□ 0.46
LRCH3Q96II8 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC17.93■□□□□ 0.46
LRCH3Q96II8 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC17.93■□□□□ 0.46
LRCH3Q96II8 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
LRCH3Q96II8 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
LRCH3Q96II8 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
LRCH3Q96II8 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
LRCH3Q96II8 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
LRCH3Q96II8 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
LRCH3Q96II8 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC17.93■□□□□ 0.46
LRCH3Q96II8 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
LRCH3Q96II8 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
LRCH3Q96II8 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC17.93■□□□□ 0.46
LRCH3Q96II8 AC135776.1-201ENST00000319817 2481 ntBASIC17.93■□□□□ 0.46
LRCH3Q96II8 AC046185.3-201ENST00000623228 1824 ntBASIC17.93■□□□□ 0.46
LRCH3Q96II8 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC17.93■□□□□ 0.46
LRCH3Q96II8 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC17.93■□□□□ 0.46
LRCH3Q96II8 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
LRCH3Q96II8 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
LRCH3Q96II8 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
LRCH3Q96II8 FOXO1B-201ENST00000504678 1527 ntBASIC17.93■□□□□ 0.46
LRCH3Q96II8 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC17.93■□□□□ 0.46
LRCH3Q96II8 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LRCH3Q96II8 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
LRCH3Q96II8 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LRCH3Q96II8 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
LRCH3Q96II8 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
LRCH3Q96II8 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC17.92■□□□□ 0.46
LRCH3Q96II8 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
LRCH3Q96II8 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LRCH3Q96II8 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LRCH3Q96II8 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC17.92■□□□□ 0.46
LRCH3Q96II8 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
LRCH3Q96II8 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
LRCH3Q96II8 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC17.92■□□□□ 0.46
LRCH3Q96II8 PRDX5-203ENST00000352435 596 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
LRCH3Q96II8 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC17.92■□□□□ 0.46
LRCH3Q96II8 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC17.92■□□□□ 0.46
LRCH3Q96II8 AC114501.2-201ENST00000439631 535 ntBASIC17.92■□□□□ 0.46
LRCH3Q96II8 AC253536.4-201ENST00000440539 267 ntBASIC17.92■□□□□ 0.46
LRCH3Q96II8 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC17.92■□□□□ 0.46
LRCH3Q96II8 LLPH-AS1-201ENST00000510317 623 ntTSL 4 BASIC17.92■□□□□ 0.46
LRCH3Q96II8 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC17.92■□□□□ 0.46
LRCH3Q96II8 AL354740.1-203ENST00000593917 424 ntTSL 3 BASIC17.92■□□□□ 0.46
LRCH3Q96II8 RPS5-209ENST00000601521 1203 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
LRCH3Q96II8 AC093726.1-201ENST00000608064 963 ntBASIC17.92■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms