Protein–RNA interactions for Protein: Q92541

RTF1, RNA polymerase-associated protein RTF1 homolog, humanhuman

Known RBP Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1Q92541 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
RTF1Q92541 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC21.67■■□□□ 1.06
RTF1Q92541 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC21.67■■□□□ 1.06
RTF1Q92541 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
RTF1Q92541 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
RTF1Q92541 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
RTF1Q92541 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC21.67■■□□□ 1.06
RTF1Q92541 DUX4L27-201ENST00000554796 1261 ntBASIC21.67■■□□□ 1.06
RTF1Q92541 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC21.67■■□□□ 1.06
RTF1Q92541 AC051619.7-201ENST00000568314 623 ntBASIC21.67■■□□□ 1.06
RTF1Q92541 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC21.67■■□□□ 1.06
RTF1Q92541 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC21.67■■□□□ 1.06
RTF1Q92541 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC21.67■■□□□ 1.06
RTF1Q92541 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC21.67■■□□□ 1.06
RTF1Q92541 MIR6080-201ENST00000617359 66 ntBASIC21.67■■□□□ 1.06
RTF1Q92541 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC21.67■■□□□ 1.06
RTF1Q92541 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC21.67■■□□□ 1.06
RTF1Q92541 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC21.67■■□□□ 1.06
RTF1Q92541 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
RTF1Q92541 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
RTF1Q92541 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
RTF1Q92541 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
RTF1Q92541 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
RTF1Q92541 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC21.67■■□□□ 1.06
RTF1Q92541 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC21.67■■□□□ 1.06
RTF1Q92541 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
RTF1Q92541 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC21.67■■□□□ 1.06
RTF1Q92541 AC005915.1-201ENST00000624912 2018 ntBASIC21.67■■□□□ 1.06
RTF1Q92541 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
RTF1Q92541 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC21.66■■□□□ 1.06
RTF1Q92541 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC21.66■■□□□ 1.06
RTF1Q92541 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
RTF1Q92541 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
RTF1Q92541 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
RTF1Q92541 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
RTF1Q92541 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC21.66■■□□□ 1.06
RTF1Q92541 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
RTF1Q92541 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
RTF1Q92541 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
RTF1Q92541 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
RTF1Q92541 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC21.66■■□□□ 1.06
RTF1Q92541 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC21.66■■□□□ 1.06
RTF1Q92541 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC21.66■■□□□ 1.06
RTF1Q92541 PP14571-201ENST00000404327 934 ntTSL 2 BASIC21.66■■□□□ 1.06
RTF1Q92541 KLF2P3-201ENST00000451977 1087 ntBASIC21.66■■□□□ 1.06
RTF1Q92541 AC125807.1-201ENST00000483097 614 ntBASIC21.66■■□□□ 1.06
RTF1Q92541 QPRT-203ENST00000562473 579 ntTSL 3 BASIC21.66■■□□□ 1.06
RTF1Q92541 AC011467.4-201ENST00000594891 528 ntBASIC21.66■■□□□ 1.06
RTF1Q92541 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
RTF1Q92541 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC21.66■■□□□ 1.06
RTF1Q92541 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC21.66■■□□□ 1.06
RTF1Q92541 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
RTF1Q92541 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC21.66■■□□□ 1.06
RTF1Q92541 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC21.66■■□□□ 1.06
RTF1Q92541 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC21.66■■□□□ 1.06
RTF1Q92541 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC21.66■■□□□ 1.06
RTF1Q92541 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
RTF1Q92541 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC21.66■■□□□ 1.06
RTF1Q92541 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC21.66■■□□□ 1.06
RTF1Q92541 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
RTF1Q92541 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC21.65■■□□□ 1.06
RTF1Q92541 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
RTF1Q92541 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
RTF1Q92541 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC21.65■■□□□ 1.06
RTF1Q92541 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
RTF1Q92541 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
RTF1Q92541 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC21.65■■□□□ 1.06
RTF1Q92541 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
RTF1Q92541 CD81-202ENST00000381036 880 ntTSL 3 BASIC21.65■■□□□ 1.06
RTF1Q92541 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC21.65■■□□□ 1.06
RTF1Q92541 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
RTF1Q92541 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
RTF1Q92541 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC21.65■■□□□ 1.06
RTF1Q92541 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
RTF1Q92541 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC21.65■■□□□ 1.06
RTF1Q92541 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
RTF1Q92541 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
RTF1Q92541 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC21.65■■□□□ 1.06
RTF1Q92541 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
RTF1Q92541 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
RTF1Q92541 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.06
RTF1Q92541 AL603756.1-201ENST00000606511 2163 ntBASIC21.64■■□□□ 1.06
RTF1Q92541 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
RTF1Q92541 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
RTF1Q92541 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
RTF1Q92541 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC21.64■■□□□ 1.06
RTF1Q92541 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
RTF1Q92541 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.05
RTF1Q92541 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
RTF1Q92541 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC21.64■■□□□ 1.05
RTF1Q92541 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.05
RTF1Q92541 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
RTF1Q92541 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC21.64■■□□□ 1.05
RTF1Q92541 AC107890.1-201ENST00000422478 521 ntBASIC21.64■■□□□ 1.05
RTF1Q92541 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC21.64■■□□□ 1.05
RTF1Q92541 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC21.64■■□□□ 1.05
RTF1Q92541 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.05
RTF1Q92541 AC005498.2-205ENST00000593218 784 ntBASIC21.64■■□□□ 1.05
RTF1Q92541 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
RTF1Q92541 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC21.64■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms