Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
DEPDC4Q8N2C3 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
DEPDC4Q8N2C3 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
DEPDC4Q8N2C3 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
DEPDC4Q8N2C3 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
DEPDC4Q8N2C3 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC15.6■□□□□ 0.09
DEPDC4Q8N2C3 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC15.6■□□□□ 0.09
DEPDC4Q8N2C3 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
DEPDC4Q8N2C3 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
DEPDC4Q8N2C3 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC15.6■□□□□ 0.09
DEPDC4Q8N2C3 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC15.6■□□□□ 0.09
DEPDC4Q8N2C3 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
DEPDC4Q8N2C3 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC15.6■□□□□ 0.09
DEPDC4Q8N2C3 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC15.6■□□□□ 0.09
DEPDC4Q8N2C3 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
DEPDC4Q8N2C3 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
DEPDC4Q8N2C3 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC15.6■□□□□ 0.09
DEPDC4Q8N2C3 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC15.6■□□□□ 0.09
DEPDC4Q8N2C3 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC15.6■□□□□ 0.09
DEPDC4Q8N2C3 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC15.6■□□□□ 0.09
DEPDC4Q8N2C3 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC15.6■□□□□ 0.09
DEPDC4Q8N2C3 KRT18P31-201ENST00000506277 1292 ntBASIC15.6■□□□□ 0.09
DEPDC4Q8N2C3 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC15.6■□□□□ 0.09
DEPDC4Q8N2C3 COX5A-204ENST00000567270 579 ntTSL 3 BASIC15.6■□□□□ 0.09
DEPDC4Q8N2C3 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
DEPDC4Q8N2C3 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC15.6■□□□□ 0.09
DEPDC4Q8N2C3 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC15.6■□□□□ 0.09
DEPDC4Q8N2C3 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC15.6■□□□□ 0.09
DEPDC4Q8N2C3 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC15.6■□□□□ 0.09
DEPDC4Q8N2C3 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
DEPDC4Q8N2C3 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC15.6■□□□□ 0.09
DEPDC4Q8N2C3 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC15.6■□□□□ 0.09
DEPDC4Q8N2C3 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC15.6■□□□□ 0.09
DEPDC4Q8N2C3 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC15.6■□□□□ 0.09
DEPDC4Q8N2C3 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
DEPDC4Q8N2C3 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC15.59■□□□□ 0.09
DEPDC4Q8N2C3 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
DEPDC4Q8N2C3 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
DEPDC4Q8N2C3 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC15.59■□□□□ 0.09
DEPDC4Q8N2C3 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
DEPDC4Q8N2C3 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
DEPDC4Q8N2C3 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC15.59■□□□□ 0.09
DEPDC4Q8N2C3 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
DEPDC4Q8N2C3 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
DEPDC4Q8N2C3 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
DEPDC4Q8N2C3 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC15.59■□□□□ 0.09
DEPDC4Q8N2C3 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
DEPDC4Q8N2C3 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
DEPDC4Q8N2C3 IGHV3-47-201ENST00000425060 335 ntBASIC15.59■□□□□ 0.09
DEPDC4Q8N2C3 AC090142.2-201ENST00000483263 416 ntBASIC15.59■□□□□ 0.09
DEPDC4Q8N2C3 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC15.59■□□□□ 0.09
DEPDC4Q8N2C3 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC15.59■□□□□ 0.09
DEPDC4Q8N2C3 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
DEPDC4Q8N2C3 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
DEPDC4Q8N2C3 IFNL4P1-201ENST00000607083 540 ntBASIC15.59■□□□□ 0.09
DEPDC4Q8N2C3 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
DEPDC4Q8N2C3 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC15.59■□□□□ 0.09
DEPDC4Q8N2C3 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC15.59■□□□□ 0.09
DEPDC4Q8N2C3 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC15.59■□□□□ 0.09
DEPDC4Q8N2C3 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC15.59■□□□□ 0.09
DEPDC4Q8N2C3 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC15.59■□□□□ 0.09
DEPDC4Q8N2C3 NUDT16-203ENST00000537561 5943 ntTSL 5 BASIC15.59■□□□□ 0.09
DEPDC4Q8N2C3 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC15.59■□□□□ 0.09
DEPDC4Q8N2C3 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
DEPDC4Q8N2C3 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.09
DEPDC4Q8N2C3 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
DEPDC4Q8N2C3 CYP51A1-201ENST00000003100 3210 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
DEPDC4Q8N2C3 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
DEPDC4Q8N2C3 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC15.58■□□□□ 0.09
DEPDC4Q8N2C3 AL645728.1-201ENST00000366221 2101 ntBASIC15.58■□□□□ 0.08
DEPDC4Q8N2C3 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC15.58■□□□□ 0.08
DEPDC4Q8N2C3 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
DEPDC4Q8N2C3 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC15.58■□□□□ 0.08
DEPDC4Q8N2C3 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
DEPDC4Q8N2C3 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.08
DEPDC4Q8N2C3 IFNA4-201ENST00000421715 978 ntAPPRIS P1 BASIC15.58■□□□□ 0.08
DEPDC4Q8N2C3 AL845331.1-201ENST00000424978 1190 ntBASIC15.58■□□□□ 0.08
DEPDC4Q8N2C3 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC15.58■□□□□ 0.08
DEPDC4Q8N2C3 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC15.58■□□□□ 0.08
DEPDC4Q8N2C3 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC15.58■□□□□ 0.08
DEPDC4Q8N2C3 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
DEPDC4Q8N2C3 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
DEPDC4Q8N2C3 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
DEPDC4Q8N2C3 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
DEPDC4Q8N2C3 AC067930.6-201ENST00000623257 4947 ntBASIC15.58■□□□□ 0.08
DEPDC4Q8N2C3 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC15.58■□□□□ 0.08
DEPDC4Q8N2C3 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
DEPDC4Q8N2C3 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC15.58■□□□□ 0.08
DEPDC4Q8N2C3 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
DEPDC4Q8N2C3 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC15.57■□□□□ 0.08
DEPDC4Q8N2C3 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC15.57■□□□□ 0.08
DEPDC4Q8N2C3 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC15.57■□□□□ 0.08
DEPDC4Q8N2C3 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC15.57■□□□□ 0.08
DEPDC4Q8N2C3 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
DEPDC4Q8N2C3 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
DEPDC4Q8N2C3 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC15.57■□□□□ 0.08
DEPDC4Q8N2C3 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC15.57■□□□□ 0.08
DEPDC4Q8N2C3 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC15.57■□□□□ 0.08
DEPDC4Q8N2C3 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
DEPDC4Q8N2C3 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms