Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
CCDC65Q8IXS2 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CCDC65Q8IXS2 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC18.5■□□□□ 0.55
CCDC65Q8IXS2 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
CCDC65Q8IXS2 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
CCDC65Q8IXS2 ME2P1-201ENST00000426028 1970 ntBASIC18.5■□□□□ 0.55
CCDC65Q8IXS2 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC18.49■□□□□ 0.55
CCDC65Q8IXS2 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CCDC65Q8IXS2 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CCDC65Q8IXS2 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CCDC65Q8IXS2 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
CCDC65Q8IXS2 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CCDC65Q8IXS2 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CCDC65Q8IXS2 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CCDC65Q8IXS2 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC18.49■□□□□ 0.55
CCDC65Q8IXS2 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
CCDC65Q8IXS2 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CCDC65Q8IXS2 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CCDC65Q8IXS2 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CCDC65Q8IXS2 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
CCDC65Q8IXS2 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CCDC65Q8IXS2 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
CCDC65Q8IXS2 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CCDC65Q8IXS2 LBH-204ENST00000406087 559 ntTSL 4 BASIC18.49■□□□□ 0.55
CCDC65Q8IXS2 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC18.49■□□□□ 0.55
CCDC65Q8IXS2 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC18.49■□□□□ 0.55
CCDC65Q8IXS2 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC18.49■□□□□ 0.55
CCDC65Q8IXS2 AC023141.13-201ENST00000604991 943 ntBASIC18.49■□□□□ 0.55
CCDC65Q8IXS2 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CCDC65Q8IXS2 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CCDC65Q8IXS2 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CCDC65Q8IXS2 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC18.49■□□□□ 0.55
CCDC65Q8IXS2 GPAA1P2-202ENST00000606848 1787 ntBASIC18.49■□□□□ 0.55
CCDC65Q8IXS2 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC18.49■□□□□ 0.55
CCDC65Q8IXS2 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CCDC65Q8IXS2 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CCDC65Q8IXS2 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CCDC65Q8IXS2 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CCDC65Q8IXS2 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CCDC65Q8IXS2 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CCDC65Q8IXS2 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC18.49■□□□□ 0.55
CCDC65Q8IXS2 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CCDC65Q8IXS2 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC18.49■□□□□ 0.55
CCDC65Q8IXS2 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CCDC65Q8IXS2 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC18.49■□□□□ 0.55
CCDC65Q8IXS2 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
CCDC65Q8IXS2 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CCDC65Q8IXS2 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CCDC65Q8IXS2 CES3-203ENST00000543856 3178 ntTSL 2 BASIC18.48■□□□□ 0.55
CCDC65Q8IXS2 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CCDC65Q8IXS2 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CCDC65Q8IXS2 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
CCDC65Q8IXS2 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
CCDC65Q8IXS2 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
CCDC65Q8IXS2 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC18.48■□□□□ 0.55
CCDC65Q8IXS2 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC18.48■□□□□ 0.55
CCDC65Q8IXS2 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CCDC65Q8IXS2 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CCDC65Q8IXS2 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
CCDC65Q8IXS2 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC18.48■□□□□ 0.55
CCDC65Q8IXS2 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC18.48■□□□□ 0.55
CCDC65Q8IXS2 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC18.48■□□□□ 0.55
CCDC65Q8IXS2 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CCDC65Q8IXS2 BEX3-201ENST00000361298 921 ntTSL 2 BASIC18.48■□□□□ 0.55
CCDC65Q8IXS2 RNU1-129P-201ENST00000384064 167 ntBASIC18.48■□□□□ 0.55
CCDC65Q8IXS2 DDT-204ENST00000404092 805 ntTSL 3 BASIC18.48■□□□□ 0.55
CCDC65Q8IXS2 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC18.48■□□□□ 0.55
CCDC65Q8IXS2 AC007967.2-201ENST00000432613 625 ntBASIC18.48■□□□□ 0.55
CCDC65Q8IXS2 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
CCDC65Q8IXS2 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC18.48■□□□□ 0.55
CCDC65Q8IXS2 RPL28-209ENST00000560055 670 ntTSL 3 BASIC18.48■□□□□ 0.55
CCDC65Q8IXS2 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC18.48■□□□□ 0.55
CCDC65Q8IXS2 U1.21-201ENST00000580816 167 ntBASIC18.48■□□□□ 0.55
CCDC65Q8IXS2 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC18.48■□□□□ 0.55
CCDC65Q8IXS2 RPS15-207ENST00000591032 550 ntTSL 3 BASIC18.48■□□□□ 0.55
CCDC65Q8IXS2 RPS15-212ENST00000593052 629 ntTSL 2 BASIC18.48■□□□□ 0.55
CCDC65Q8IXS2 AL031055.1-201ENST00000606362 631 ntBASIC18.48■□□□□ 0.55
CCDC65Q8IXS2 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CCDC65Q8IXS2 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC18.48■□□□□ 0.55
CCDC65Q8IXS2 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC18.48■□□□□ 0.55
CCDC65Q8IXS2 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC18.48■□□□□ 0.55
CCDC65Q8IXS2 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CCDC65Q8IXS2 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CCDC65Q8IXS2 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CCDC65Q8IXS2 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
CCDC65Q8IXS2 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CCDC65Q8IXS2 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC18.48■□□□□ 0.55
CCDC65Q8IXS2 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CCDC65Q8IXS2 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CCDC65Q8IXS2 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CCDC65Q8IXS2 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
CCDC65Q8IXS2 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC18.47■□□□□ 0.55
CCDC65Q8IXS2 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CCDC65Q8IXS2 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
CCDC65Q8IXS2 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC18.47■□□□□ 0.55
CCDC65Q8IXS2 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC18.47■□□□□ 0.55
CCDC65Q8IXS2 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
CCDC65Q8IXS2 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CCDC65Q8IXS2 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
CCDC65Q8IXS2 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms