Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 PTPA-213ENST00000419582 952 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
USP54Q70EL1 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC21.77■■□□□ 1.08
USP54Q70EL1 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC21.77■■□□□ 1.08
USP54Q70EL1 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
USP54Q70EL1 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC21.77■■□□□ 1.08
USP54Q70EL1 PAM16-215ENST00000577031 548 ntTSL 4 BASIC21.77■■□□□ 1.08
USP54Q70EL1 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC21.77■■□□□ 1.08
USP54Q70EL1 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
USP54Q70EL1 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
USP54Q70EL1 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
USP54Q70EL1 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
USP54Q70EL1 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
USP54Q70EL1 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC21.77■■□□□ 1.08
USP54Q70EL1 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC21.77■■□□□ 1.08
USP54Q70EL1 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
USP54Q70EL1 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC21.77■■□□□ 1.07
USP54Q70EL1 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
USP54Q70EL1 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC21.76■■□□□ 1.07
USP54Q70EL1 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC21.76■■□□□ 1.07
USP54Q70EL1 ANKRD19P-201ENST00000338192 862 ntBASIC21.76■■□□□ 1.07
USP54Q70EL1 MXI1-205ENST00000393134 889 ntTSL 2 BASIC21.76■■□□□ 1.07
USP54Q70EL1 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC21.76■■□□□ 1.07
USP54Q70EL1 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC21.76■■□□□ 1.07
USP54Q70EL1 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC21.76■■□□□ 1.07
USP54Q70EL1 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC21.76■■□□□ 1.07
USP54Q70EL1 MRPL36-204ENST00000508987 686 ntAPPRIS P1 TSL 2 BASIC21.76■■□□□ 1.07
USP54Q70EL1 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC21.76■■□□□ 1.07
USP54Q70EL1 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC21.76■■□□□ 1.07
USP54Q70EL1 BRI3BPP1-201ENST00000594224 787 ntBASIC21.76■■□□□ 1.07
USP54Q70EL1 TMEM261P1-201ENST00000604899 340 ntBASIC21.76■■□□□ 1.07
USP54Q70EL1 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
USP54Q70EL1 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
USP54Q70EL1 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC21.76■■□□□ 1.07
USP54Q70EL1 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
USP54Q70EL1 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
USP54Q70EL1 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC21.76■■□□□ 1.07
USP54Q70EL1 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC21.76■■□□□ 1.07
USP54Q70EL1 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC21.76■■□□□ 1.07
USP54Q70EL1 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
USP54Q70EL1 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC21.76■■□□□ 1.07
USP54Q70EL1 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
USP54Q70EL1 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC21.76■■□□□ 1.07
USP54Q70EL1 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
USP54Q70EL1 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
USP54Q70EL1 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC21.76■■□□□ 1.07
USP54Q70EL1 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
USP54Q70EL1 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
USP54Q70EL1 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC21.76■■□□□ 1.07
USP54Q70EL1 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
USP54Q70EL1 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC21.76■■□□□ 1.07
USP54Q70EL1 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
USP54Q70EL1 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC21.75■■□□□ 1.07
USP54Q70EL1 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC21.75■■□□□ 1.07
USP54Q70EL1 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC21.75■■□□□ 1.07
USP54Q70EL1 RARRES2P5-201ENST00000564013 466 ntBASIC21.75■■□□□ 1.07
USP54Q70EL1 AL008721.1-201ENST00000609964 604 ntBASIC21.75■■□□□ 1.07
USP54Q70EL1 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC21.75■■□□□ 1.07
USP54Q70EL1 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC21.75■■□□□ 1.07
USP54Q70EL1 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC21.75■■□□□ 1.07
USP54Q70EL1 GRN-214ENST00000589265 1632 ntTSL 5 BASIC21.75■■□□□ 1.07
USP54Q70EL1 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC21.75■■□□□ 1.07
USP54Q70EL1 LINC01144-201ENST00000626198 1710 ntBASIC21.75■■□□□ 1.07
USP54Q70EL1 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC21.75■■□□□ 1.07
USP54Q70EL1 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
USP54Q70EL1 AC105020.1-201ENST00000435356 2205 ntBASIC21.75■■□□□ 1.07
USP54Q70EL1 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
USP54Q70EL1 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
USP54Q70EL1 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
USP54Q70EL1 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
USP54Q70EL1 MEP1AP4-201ENST00000423244 1087 ntBASIC21.75■■□□□ 1.07
USP54Q70EL1 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC21.75■■□□□ 1.07
USP54Q70EL1 MYCLP2-201ENST00000449268 967 ntBASIC21.75■■□□□ 1.07
USP54Q70EL1 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC21.75■■□□□ 1.07
USP54Q70EL1 MIR6805-201ENST00000615055 62 ntBASIC21.75■■□□□ 1.07
USP54Q70EL1 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC21.75■■□□□ 1.07
USP54Q70EL1 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
USP54Q70EL1 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC21.75■■□□□ 1.07
USP54Q70EL1 CLK3P2-201ENST00000427566 1453 ntBASIC21.75■■□□□ 1.07
USP54Q70EL1 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC21.75■■□□□ 1.07
USP54Q70EL1 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
USP54Q70EL1 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC21.75■■□□□ 1.07
USP54Q70EL1 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC21.75■■□□□ 1.07
USP54Q70EL1 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC21.75■■□□□ 1.07
USP54Q70EL1 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC21.75■■□□□ 1.07
USP54Q70EL1 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
USP54Q70EL1 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC21.74■■□□□ 1.07
USP54Q70EL1 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC21.74■■□□□ 1.07
USP54Q70EL1 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC21.74■■□□□ 1.07
USP54Q70EL1 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC21.74■■□□□ 1.07
USP54Q70EL1 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
USP54Q70EL1 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
USP54Q70EL1 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
USP54Q70EL1 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
USP54Q70EL1 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
USP54Q70EL1 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
USP54Q70EL1 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC21.74■■□□□ 1.07
USP54Q70EL1 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC21.74■■□□□ 1.07
USP54Q70EL1 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
USP54Q70EL1 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC21.74■■□□□ 1.07
USP54Q70EL1 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC21.74■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms