Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PTCHD3Q3KNS1 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
PTCHD3Q3KNS1 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
PTCHD3Q3KNS1 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
PTCHD3Q3KNS1 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PTCHD3Q3KNS1 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
PTCHD3Q3KNS1 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
PTCHD3Q3KNS1 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PTCHD3Q3KNS1 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC16.3■□□□□ 0.2
PTCHD3Q3KNS1 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PTCHD3Q3KNS1 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
PTCHD3Q3KNS1 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC16.3■□□□□ 0.2
PTCHD3Q3KNS1 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC16.3■□□□□ 0.2
PTCHD3Q3KNS1 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC16.3■□□□□ 0.2
PTCHD3Q3KNS1 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
PTCHD3Q3KNS1 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC16.3■□□□□ 0.2
PTCHD3Q3KNS1 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC16.3■□□□□ 0.2
PTCHD3Q3KNS1 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC16.3■□□□□ 0.2
PTCHD3Q3KNS1 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
PTCHD3Q3KNS1 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
PTCHD3Q3KNS1 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PTCHD3Q3KNS1 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC16.3■□□□□ 0.2
PTCHD3Q3KNS1 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PTCHD3Q3KNS1 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PTCHD3Q3KNS1 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PTCHD3Q3KNS1 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PTCHD3Q3KNS1 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
PTCHD3Q3KNS1 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PTCHD3Q3KNS1 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PTCHD3Q3KNS1 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
PTCHD3Q3KNS1 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC16.3■□□□□ 0.2
PTCHD3Q3KNS1 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
PTCHD3Q3KNS1 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
PTCHD3Q3KNS1 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC16.3■□□□□ 0.2
PTCHD3Q3KNS1 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PTCHD3Q3KNS1 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC16.3■□□□□ 0.2
PTCHD3Q3KNS1 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PTCHD3Q3KNS1 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
PTCHD3Q3KNS1 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
PTCHD3Q3KNS1 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
PTCHD3Q3KNS1 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
PTCHD3Q3KNS1 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC16.29■□□□□ 0.2
PTCHD3Q3KNS1 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
PTCHD3Q3KNS1 PC-214ENST00000628663 1470 ntTSL 5 BASIC16.29■□□□□ 0.2
PTCHD3Q3KNS1 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC16.29■□□□□ 0.2
PTCHD3Q3KNS1 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
PTCHD3Q3KNS1 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
PTCHD3Q3KNS1 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC16.29■□□□□ 0.2
PTCHD3Q3KNS1 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
PTCHD3Q3KNS1 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC16.29■□□□□ 0.2
PTCHD3Q3KNS1 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
PTCHD3Q3KNS1 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC16.29■□□□□ 0.2
PTCHD3Q3KNS1 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
PTCHD3Q3KNS1 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
PTCHD3Q3KNS1 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
PTCHD3Q3KNS1 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
PTCHD3Q3KNS1 HNRNPA1P28-201ENST00000424481 961 ntBASIC16.29■□□□□ 0.2
PTCHD3Q3KNS1 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC16.29■□□□□ 0.2
PTCHD3Q3KNS1 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC16.29■□□□□ 0.2
PTCHD3Q3KNS1 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC16.29■□□□□ 0.2
PTCHD3Q3KNS1 POLD4-207ENST00000531239 584 ntTSL 2 BASIC16.29■□□□□ 0.2
PTCHD3Q3KNS1 CD63-210ENST00000550776 870 ntTSL 5 BASIC16.29■□□□□ 0.2
PTCHD3Q3KNS1 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
PTCHD3Q3KNS1 CYP2A7P1-201ENST00000595391 815 ntBASIC16.29■□□□□ 0.2
PTCHD3Q3KNS1 MTDHP5-201ENST00000598980 586 ntBASIC16.29■□□□□ 0.2
PTCHD3Q3KNS1 AC010507.1-201ENST00000633895 436 ntBASIC16.29■□□□□ 0.2
PTCHD3Q3KNS1 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
PTCHD3Q3KNS1 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
PTCHD3Q3KNS1 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
PTCHD3Q3KNS1 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC16.29■□□□□ 0.2
PTCHD3Q3KNS1 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
PTCHD3Q3KNS1 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
PTCHD3Q3KNS1 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC16.29■□□□□ 0.2
PTCHD3Q3KNS1 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
PTCHD3Q3KNS1 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC16.29■□□□□ 0.2
PTCHD3Q3KNS1 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC16.29■□□□□ 0.2
PTCHD3Q3KNS1 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC16.29■□□□□ 0.2
PTCHD3Q3KNS1 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
PTCHD3Q3KNS1 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
PTCHD3Q3KNS1 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC16.29■□□□□ 0.2
PTCHD3Q3KNS1 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
PTCHD3Q3KNS1 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC16.29■□□□□ 0.2
PTCHD3Q3KNS1 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC16.28■□□□□ 0.2
PTCHD3Q3KNS1 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC16.28■□□□□ 0.2
PTCHD3Q3KNS1 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC16.28■□□□□ 0.2
PTCHD3Q3KNS1 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
PTCHD3Q3KNS1 WT1-209ENST00000530998 2421 ntTSL 2 BASIC16.28■□□□□ 0.2
PTCHD3Q3KNS1 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
PTCHD3Q3KNS1 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
PTCHD3Q3KNS1 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
PTCHD3Q3KNS1 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
PTCHD3Q3KNS1 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
PTCHD3Q3KNS1 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC16.28■□□□□ 0.2
PTCHD3Q3KNS1 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
PTCHD3Q3KNS1 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
PTCHD3Q3KNS1 ALOX12P2-203ENST00000570921 1945 ntBASIC16.28■□□□□ 0.2
PTCHD3Q3KNS1 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
PTCHD3Q3KNS1 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC16.28■□□□□ 0.2
PTCHD3Q3KNS1 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
PTCHD3Q3KNS1 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 37.3 ms