Protein–RNA interactions for Protein: Q33E94

RFX4, Transcription factor RFX4, humanhuman

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4Q33E94 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC15.57■□□□□ 0.08
RFX4Q33E94 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC15.57■□□□□ 0.08
RFX4Q33E94 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
RFX4Q33E94 AC126755.1-201ENST00000525846 6405 ntBASIC15.57■□□□□ 0.08
RFX4Q33E94 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
RFX4Q33E94 PRDM6-201ENST00000407847 9267 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
RFX4Q33E94 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
RFX4Q33E94 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
RFX4Q33E94 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
RFX4Q33E94 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
RFX4Q33E94 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
RFX4Q33E94 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
RFX4Q33E94 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
RFX4Q33E94 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
RFX4Q33E94 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
RFX4Q33E94 NHS-201ENST00000380060 8761 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
RFX4Q33E94 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
RFX4Q33E94 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
RFX4Q33E94 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
RFX4Q33E94 RCN1P1-201ENST00000400413 996 ntBASIC15.56■□□□□ 0.08
RFX4Q33E94 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
RFX4Q33E94 VENTXP7-201ENST00000475503 772 ntBASIC15.56■□□□□ 0.08
RFX4Q33E94 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC15.56■□□□□ 0.08
RFX4Q33E94 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC15.56■□□□□ 0.08
RFX4Q33E94 RN7SL850P-201ENST00000579959 291 ntBASIC15.56■□□□□ 0.08
RFX4Q33E94 AC011467.2-201ENST00000598425 242 ntBASIC15.56■□□□□ 0.08
RFX4Q33E94 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC15.56■□□□□ 0.08
RFX4Q33E94 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC15.56■□□□□ 0.08
RFX4Q33E94 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC15.56■□□□□ 0.08
RFX4Q33E94 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
RFX4Q33E94 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
RFX4Q33E94 MED25-212ENST00000618715 1467 ntTSL 5 BASIC15.56■□□□□ 0.08
RFX4Q33E94 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
RFX4Q33E94 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC15.56■□□□□ 0.08
RFX4Q33E94 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC15.56■□□□□ 0.08
RFX4Q33E94 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
RFX4Q33E94 AC006058.4-201ENST00000624016 1670 ntBASIC15.56■□□□□ 0.08
RFX4Q33E94 PC-204ENST00000524491 1714 ntTSL 2 BASIC15.56■□□□□ 0.08
RFX4Q33E94 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
RFX4Q33E94 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
RFX4Q33E94 AC132938.5-201ENST00000624980 1813 ntBASIC15.56■□□□□ 0.08
RFX4Q33E94 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
RFX4Q33E94 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC15.56■□□□□ 0.08
RFX4Q33E94 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
RFX4Q33E94 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
RFX4Q33E94 ABHD16A-201ENST00000395952 2103 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
RFX4Q33E94 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC15.56■□□□□ 0.08
RFX4Q33E94 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
RFX4Q33E94 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC15.56■□□□□ 0.08
RFX4Q33E94 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
RFX4Q33E94 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC15.56■□□□□ 0.08
RFX4Q33E94 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC15.56■□□□□ 0.08
RFX4Q33E94 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
RFX4Q33E94 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
RFX4Q33E94 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
RFX4Q33E94 PHKG2-204ENST00000563588 5539 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
RFX4Q33E94 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
RFX4Q33E94 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC15.55■□□□□ 0.08
RFX4Q33E94 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC15.55■□□□□ 0.08
RFX4Q33E94 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC15.55■□□□□ 0.08
RFX4Q33E94 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC15.55■□□□□ 0.08
RFX4Q33E94 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
RFX4Q33E94 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC15.55■□□□□ 0.08
RFX4Q33E94 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
RFX4Q33E94 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
RFX4Q33E94 KCTD7-206ENST00000639828 5951 ntAPPRIS P3 TSL 2 BASIC15.55■□□□□ 0.08
RFX4Q33E94 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
RFX4Q33E94 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC15.55■□□□□ 0.08
RFX4Q33E94 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
RFX4Q33E94 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
RFX4Q33E94 GGT4P-201ENST00000623672 1708 ntBASIC15.55■□□□□ 0.08
RFX4Q33E94 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
RFX4Q33E94 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
RFX4Q33E94 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
RFX4Q33E94 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
RFX4Q33E94 GUK1-204ENST00000366721 689 ntTSL 3 BASIC15.55■□□□□ 0.08
RFX4Q33E94 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC15.55■□□□□ 0.08
RFX4Q33E94 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC15.55■□□□□ 0.08
RFX4Q33E94 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
RFX4Q33E94 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
RFX4Q33E94 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC15.55■□□□□ 0.08
RFX4Q33E94 DUX4L17-201ENST00000557360 1267 ntBASIC15.55■□□□□ 0.08
RFX4Q33E94 AC013467.2-201ENST00000605472 835 ntBASIC15.55■□□□□ 0.08
RFX4Q33E94 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC15.55■□□□□ 0.08
RFX4Q33E94 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
RFX4Q33E94 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
RFX4Q33E94 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC15.55■□□□□ 0.08
RFX4Q33E94 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
RFX4Q33E94 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
RFX4Q33E94 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
RFX4Q33E94 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
RFX4Q33E94 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
RFX4Q33E94 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
RFX4Q33E94 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC15.54■□□□□ 0.08
RFX4Q33E94 SP100-205ENST00000409824 1802 ntTSL 5 BASIC15.54■□□□□ 0.08
RFX4Q33E94 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC15.54■□□□□ 0.08
RFX4Q33E94 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
RFX4Q33E94 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC15.54■□□□□ 0.08
RFX4Q33E94 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
RFX4Q33E94 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC15.54■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms