Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL28A1Q2UY09 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC16.04■□□□□ 0.16
COL28A1Q2UY09 LINC00982-205ENST00000420957 435 ntBASIC16.04■□□□□ 0.16
COL28A1Q2UY09 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC16.04■□□□□ 0.16
COL28A1Q2UY09 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC16.04■□□□□ 0.16
COL28A1Q2UY09 SPCS2P4-201ENST00000436160 681 ntBASIC16.04■□□□□ 0.16
COL28A1Q2UY09 IGHV3-52-201ENST00000519770 353 ntBASIC16.04■□□□□ 0.16
COL28A1Q2UY09 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC16.04■□□□□ 0.16
COL28A1Q2UY09 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC16.04■□□□□ 0.16
COL28A1Q2UY09 SSH2-210ENST00000582084 560 ntTSL 3 BASIC16.04■□□□□ 0.16
COL28A1Q2UY09 MIR6805-201ENST00000615055 62 ntBASIC16.04■□□□□ 0.16
COL28A1Q2UY09 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
COL28A1Q2UY09 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL28A1Q2UY09 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
COL28A1Q2UY09 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL28A1Q2UY09 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC16.04■□□□□ 0.16
COL28A1Q2UY09 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL28A1Q2UY09 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
COL28A1Q2UY09 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
COL28A1Q2UY09 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC16.04■□□□□ 0.16
COL28A1Q2UY09 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC16.04■□□□□ 0.16
COL28A1Q2UY09 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL28A1Q2UY09 AC080080.1-201ENST00000625121 2420 ntBASIC16.04■□□□□ 0.16
COL28A1Q2UY09 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
COL28A1Q2UY09 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL28A1Q2UY09 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC16.04■□□□□ 0.16
COL28A1Q2UY09 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
COL28A1Q2UY09 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC16.04■□□□□ 0.16
COL28A1Q2UY09 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
COL28A1Q2UY09 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
COL28A1Q2UY09 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
COL28A1Q2UY09 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
COL28A1Q2UY09 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC16.03■□□□□ 0.16
COL28A1Q2UY09 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
COL28A1Q2UY09 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
COL28A1Q2UY09 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
COL28A1Q2UY09 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
COL28A1Q2UY09 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC16.03■□□□□ 0.16
COL28A1Q2UY09 DIABLO-203ENST00000353548 1345 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
COL28A1Q2UY09 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
COL28A1Q2UY09 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC16.03■□□□□ 0.16
COL28A1Q2UY09 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
COL28A1Q2UY09 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
COL28A1Q2UY09 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
COL28A1Q2UY09 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC16.03■□□□□ 0.16
COL28A1Q2UY09 MIR658-201ENST00000385210 100 ntBASIC16.03■□□□□ 0.16
COL28A1Q2UY09 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
COL28A1Q2UY09 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
COL28A1Q2UY09 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC16.03■□□□□ 0.16
COL28A1Q2UY09 H2AFV-206ENST00000437072 589 ntTSL 4 BASIC16.03■□□□□ 0.16
COL28A1Q2UY09 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC16.03■□□□□ 0.16
COL28A1Q2UY09 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC16.03■□□□□ 0.16
COL28A1Q2UY09 CDK4-206ENST00000549606 558 ntTSL 2 BASIC16.03■□□□□ 0.16
COL28A1Q2UY09 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC16.03■□□□□ 0.16
COL28A1Q2UY09 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC16.03■□□□□ 0.16
COL28A1Q2UY09 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC16.03■□□□□ 0.16
COL28A1Q2UY09 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
COL28A1Q2UY09 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
COL28A1Q2UY09 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC16.03■□□□□ 0.16
COL28A1Q2UY09 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
COL28A1Q2UY09 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC16.03■□□□□ 0.16
COL28A1Q2UY09 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
COL28A1Q2UY09 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC16.03■□□□□ 0.16
COL28A1Q2UY09 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
COL28A1Q2UY09 AC138969.3-201ENST00000546612 1459 ntBASIC16.03■□□□□ 0.16
COL28A1Q2UY09 AC138932.2-201ENST00000548268 1459 ntBASIC16.03■□□□□ 0.16
COL28A1Q2UY09 AC126755.4-201ENST00000549796 1459 ntBASIC16.03■□□□□ 0.16
COL28A1Q2UY09 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
COL28A1Q2UY09 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
COL28A1Q2UY09 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
COL28A1Q2UY09 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
COL28A1Q2UY09 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
COL28A1Q2UY09 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
COL28A1Q2UY09 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC16.02■□□□□ 0.16
COL28A1Q2UY09 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.16
COL28A1Q2UY09 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC16.02■□□□□ 0.16
COL28A1Q2UY09 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC16.02■□□□□ 0.16
COL28A1Q2UY09 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC16.02■□□□□ 0.16
COL28A1Q2UY09 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.16
COL28A1Q2UY09 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
COL28A1Q2UY09 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC16.02■□□□□ 0.16
COL28A1Q2UY09 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC16.02■□□□□ 0.16
COL28A1Q2UY09 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
COL28A1Q2UY09 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC16.02■□□□□ 0.16
COL28A1Q2UY09 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
COL28A1Q2UY09 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
COL28A1Q2UY09 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC16.02■□□□□ 0.16
COL28A1Q2UY09 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
COL28A1Q2UY09 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
COL28A1Q2UY09 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC16.02■□□□□ 0.16
COL28A1Q2UY09 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
COL28A1Q2UY09 AC140658.5-201ENST00000438532 169 ntBASIC16.02■□□□□ 0.16
COL28A1Q2UY09 ACA64.2-201ENST00000459014 129 ntBASIC16.02■□□□□ 0.16
COL28A1Q2UY09 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.16
COL28A1Q2UY09 RARRES2P8-201ENST00000566335 367 ntBASIC16.02■□□□□ 0.16
COL28A1Q2UY09 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC16.02■□□□□ 0.16
COL28A1Q2UY09 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
COL28A1Q2UY09 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
COL28A1Q2UY09 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC16.02■□□□□ 0.15
COL28A1Q2UY09 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC16.02■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 49.1 ms