Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC10.1□□□□□ -0.79
HSPG2P98160 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC10.1□□□□□ -0.79
HSPG2P98160 LARP4-220ENST00000615080 856 ntTSL 5 BASIC10.1□□□□□ -0.79
HSPG2P98160 HADH-212ENST00000638621 741 ntTSL 5 BASIC10.1□□□□□ -0.79
HSPG2P98160 AP4M1-201ENST00000359593 1817 ntAPPRIS P1 TSL 1 (best) BASIC10.1□□□□□ -0.79
HSPG2P98160 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC10.1□□□□□ -0.79
HSPG2P98160 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC10.1□□□□□ -0.79
HSPG2P98160 AL589702.1-201ENST00000641229 1509 ntBASIC10.1□□□□□ -0.79
HSPG2P98160 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC10.1□□□□□ -0.79
HSPG2P98160 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC10.1□□□□□ -0.79
HSPG2P98160 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC10.1□□□□□ -0.79
HSPG2P98160 PEA15-203ENST00000368077 1021 ntTSL 2 BASIC10.1□□□□□ -0.79
HSPG2P98160 AIMP2-202ENST00000395236 860 ntTSL 2 BASIC10.1□□□□□ -0.79
HSPG2P98160 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC10.1□□□□□ -0.79
HSPG2P98160 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC10.1□□□□□ -0.79
HSPG2P98160 BRI3BPP1-201ENST00000594224 787 ntBASIC10.1□□□□□ -0.79
HSPG2P98160 RPL35-206ENST00000629845 340 ntTSL 5 BASIC10.1□□□□□ -0.79
HSPG2P98160 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC10.1□□□□□ -0.79
HSPG2P98160 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC10.1□□□□□ -0.79
HSPG2P98160 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC10.1□□□□□ -0.79
HSPG2P98160 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC10.1□□□□□ -0.79
HSPG2P98160 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC10.1□□□□□ -0.79
HSPG2P98160 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC10.1□□□□□ -0.79
HSPG2P98160 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC10.1□□□□□ -0.79
HSPG2P98160 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC10.1□□□□□ -0.79
HSPG2P98160 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC10.1□□□□□ -0.79
HSPG2P98160 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC10.1□□□□□ -0.79
HSPG2P98160 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC10.1□□□□□ -0.79
HSPG2P98160 ARTN-209ENST00000479128 471 ntTSL 3 BASIC10.1□□□□□ -0.79
HSPG2P98160 SPAG5-AS1-203ENST00000554154 491 ntTSL 2 BASIC10.1□□□□□ -0.79
HSPG2P98160 LINC01451-201ENST00000623792 534 ntBASIC10.1□□□□□ -0.79
HSPG2P98160 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC10.09□□□□□ -0.79
HSPG2P98160 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC10.09□□□□□ -0.79
HSPG2P98160 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC10.09□□□□□ -0.79
HSPG2P98160 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC10.09□□□□□ -0.79
HSPG2P98160 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC10.09□□□□□ -0.79
HSPG2P98160 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC10.09□□□□□ -0.79
HSPG2P98160 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC10.09□□□□□ -0.79
HSPG2P98160 HIST2H2AA3-201ENST00000369159 549 ntAPPRIS P1 BASIC10.09□□□□□ -0.79
HSPG2P98160 GDAP1-202ENST00000434412 1228 ntTSL 1 (best) BASIC10.09□□□□□ -0.79
HSPG2P98160 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC10.09□□□□□ -0.79
HSPG2P98160 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC10.09□□□□□ -0.79
HSPG2P98160 NDUFV2P1-201ENST00000596415 907 ntBASIC10.09□□□□□ -0.79
HSPG2P98160 LINC00116-203ENST00000611969 441 ntAPPRIS ALT2 TSL 1 (best) BASIC10.09□□□□□ -0.79
HSPG2P98160 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC10.09□□□□□ -0.79
HSPG2P98160 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC10.09□□□□□ -0.79
HSPG2P98160 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC10.09□□□□□ -0.79
HSPG2P98160 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC10.09□□□□□ -0.79
HSPG2P98160 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC10.09□□□□□ -0.79
HSPG2P98160 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC10.09□□□□□ -0.79
HSPG2P98160 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC10.09□□□□□ -0.79
HSPG2P98160 KRT8P49-201ENST00000604166 1432 ntBASIC10.09□□□□□ -0.79
HSPG2P98160 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC10.09□□□□□ -0.79
HSPG2P98160 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC10.09□□□□□ -0.79
HSPG2P98160 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC10.09□□□□□ -0.79
HSPG2P98160 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC10.09□□□□□ -0.79
HSPG2P98160 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC10.09□□□□□ -0.79
HSPG2P98160 SDCCAG3P2-201ENST00000326105 1023 ntBASIC10.09□□□□□ -0.79
HSPG2P98160 AK1-202ENST00000373156 757 ntAPPRIS P1 TSL 3 BASIC10.09□□□□□ -0.79
HSPG2P98160 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC10.09□□□□□ -0.79
HSPG2P98160 PENK-202ENST00000451791 1029 ntAPPRIS P1 TSL 1 (best) BASIC10.09□□□□□ -0.79
HSPG2P98160 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC10.09□□□□□ -0.79
HSPG2P98160 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC10.09□□□□□ -0.79
HSPG2P98160 UBXN1-214ENST00000533000 367 ntTSL 5 BASIC10.09□□□□□ -0.79
HSPG2P98160 IGHV3OR16-9-202ENST00000558425 288 ntAPPRIS ALT2 BASIC10.09□□□□□ -0.79
HSPG2P98160 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC10.09□□□□□ -0.79
HSPG2P98160 FXYD6-217ENST00000584394 669 ntTSL 3 BASIC10.09□□□□□ -0.79
HSPG2P98160 AC091812.3-201ENST00000621362 345 ntBASIC10.09□□□□□ -0.79
HSPG2P98160 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC10.09□□□□□ -0.79
HSPG2P98160 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC10.09□□□□□ -0.79
HSPG2P98160 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC10.09□□□□□ -0.79
HSPG2P98160 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC10.09□□□□□ -0.79
HSPG2P98160 PC-204ENST00000524491 1714 ntTSL 2 BASIC10.09□□□□□ -0.79
HSPG2P98160 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC10.09□□□□□ -0.79
HSPG2P98160 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC10.09□□□□□ -0.79
HSPG2P98160 FAM197Y7-201ENST00000432892 766 ntBASIC10.09□□□□□ -0.79
HSPG2P98160 RPL13P2-201ENST00000440687 659 ntBASIC10.09□□□□□ -0.79
HSPG2P98160 AC073573.1-201ENST00000550908 481 ntTSL 3 BASIC10.09□□□□□ -0.79
HSPG2P98160 AP006547.1-201ENST00000563435 692 ntBASIC10.09□□□□□ -0.79
HSPG2P98160 AC061992.1-201ENST00000592569 777 ntTSL 3 BASIC10.09□□□□□ -0.79
HSPG2P98160 AL096828.3-201ENST00000615354 462 ntBASIC10.09□□□□□ -0.79
HSPG2P98160 AP001505.2-201ENST00000616815 443 ntBASIC10.09□□□□□ -0.79
HSPG2P98160 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC10.09□□□□□ -0.79
HSPG2P98160 RHOXF1P1-202ENST00000635473 501 ntBASIC10.09□□□□□ -0.79
HSPG2P98160 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC10.09□□□□□ -0.79
HSPG2P98160 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC10.09□□□□□ -0.79
HSPG2P98160 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC10.09□□□□□ -0.79
HSPG2P98160 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC10.08□□□□□ -0.8
HSPG2P98160 DNASE1L2-204ENST00000567494 1301 ntTSL 1 (best) BASIC10.08□□□□□ -0.8
HSPG2P98160 AC006480.2-201ENST00000609770 1337 ntBASIC10.08□□□□□ -0.8
HSPG2P98160 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
HSPG2P98160 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
HSPG2P98160 NFYC-202ENST00000372651 1202 ntAPPRIS P3 TSL 5 BASIC10.08□□□□□ -0.8
HSPG2P98160 ARMC12-203ENST00000373869 1111 ntTSL 2 BASIC10.08□□□□□ -0.8
HSPG2P98160 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC10.08□□□□□ -0.8
HSPG2P98160 AL096772.1-201ENST00000451135 781 ntTSL 1 (best) BASIC10.08□□□□□ -0.8
HSPG2P98160 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC10.08□□□□□ -0.8
HSPG2P98160 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC10.08□□□□□ -0.8
HSPG2P98160 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
HSPG2P98160 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC10.08□□□□□ -0.8
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms