Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC14.3□□□□□ -0.12
ABCA4P78363 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
ABCA4P78363 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC14.3□□□□□ -0.12
ABCA4P78363 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
ABCA4P78363 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC14.3□□□□□ -0.12
ABCA4P78363 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
ABCA4P78363 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
ABCA4P78363 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC14.3□□□□□ -0.12
ABCA4P78363 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
ABCA4P78363 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC14.3□□□□□ -0.12
ABCA4P78363 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC14.3□□□□□ -0.12
ABCA4P78363 AL080243.2-201ENST00000418783 582 ntBASIC14.3□□□□□ -0.12
ABCA4P78363 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC14.3□□□□□ -0.12
ABCA4P78363 AC027369.6-201ENST00000525520 931 ntBASIC14.3□□□□□ -0.12
ABCA4P78363 TP53TG3HP-202ENST00000569755 579 ntBASIC14.3□□□□□ -0.12
ABCA4P78363 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC14.3□□□□□ -0.12
ABCA4P78363 WT1-AS_2.1-201ENST00000613208 137 ntBASIC14.3□□□□□ -0.12
ABCA4P78363 AC007967.4-201ENST00000614700 386 ntBASIC14.3□□□□□ -0.12
ABCA4P78363 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC14.3□□□□□ -0.12
ABCA4P78363 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
ABCA4P78363 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
ABCA4P78363 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
ABCA4P78363 CROCCP2-202ENST00000412962 2773 ntBASIC14.3□□□□□ -0.12
ABCA4P78363 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
ABCA4P78363 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
ABCA4P78363 FOXO1B-201ENST00000504678 1527 ntBASIC14.3□□□□□ -0.12
ABCA4P78363 NBEA-201ENST00000310336 10794 ntAPPRIS ALT1 TSL 1 (best) BASIC14.3□□□□□ -0.12
ABCA4P78363 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC14.3□□□□□ -0.12
ABCA4P78363 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
ABCA4P78363 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC14.3□□□□□ -0.12
ABCA4P78363 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
ABCA4P78363 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
ABCA4P78363 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
ABCA4P78363 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC14.3□□□□□ -0.12
ABCA4P78363 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
ABCA4P78363 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC14.3□□□□□ -0.12
ABCA4P78363 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
ABCA4P78363 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC14.3□□□□□ -0.12
ABCA4P78363 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
ABCA4P78363 CYP2A7P1-201ENST00000595391 815 ntBASIC14.3□□□□□ -0.12
ABCA4P78363 ACE-204ENST00000428043 5120 ntTSL 2 BASIC14.3□□□□□ -0.12
ABCA4P78363 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
ABCA4P78363 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
ABCA4P78363 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
ABCA4P78363 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC14.3□□□□□ -0.12
ABCA4P78363 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
ABCA4P78363 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
ABCA4P78363 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
ABCA4P78363 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
ABCA4P78363 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
ABCA4P78363 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC14.3□□□□□ -0.12
ABCA4P78363 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC14.3□□□□□ -0.12
ABCA4P78363 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
ABCA4P78363 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
ABCA4P78363 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
ABCA4P78363 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC14.29□□□□□ -0.12
ABCA4P78363 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC14.29□□□□□ -0.12
ABCA4P78363 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
ABCA4P78363 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
ABCA4P78363 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
ABCA4P78363 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
ABCA4P78363 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
ABCA4P78363 DGCR5-201ENST00000399539 862 ntBASIC14.29□□□□□ -0.12
ABCA4P78363 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
ABCA4P78363 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC14.29□□□□□ -0.12
ABCA4P78363 STARD13-205ENST00000439831 945 ntTSL 2 BASIC14.29□□□□□ -0.12
ABCA4P78363 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC14.29□□□□□ -0.12
ABCA4P78363 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC14.29□□□□□ -0.12
ABCA4P78363 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
ABCA4P78363 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC14.29□□□□□ -0.12
ABCA4P78363 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC14.29□□□□□ -0.12
ABCA4P78363 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC14.29□□□□□ -0.12
ABCA4P78363 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
ABCA4P78363 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
ABCA4P78363 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
ABCA4P78363 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC14.29□□□□□ -0.12
ABCA4P78363 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
ABCA4P78363 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
ABCA4P78363 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
ABCA4P78363 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC14.29□□□□□ -0.12
ABCA4P78363 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
ABCA4P78363 AL138688.1-201ENST00000624851 1594 ntBASIC14.29□□□□□ -0.12
ABCA4P78363 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
ABCA4P78363 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
ABCA4P78363 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC14.29□□□□□ -0.12
ABCA4P78363 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
ABCA4P78363 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
ABCA4P78363 AC098614.1-201ENST00000368528 745 ntBASIC14.29□□□□□ -0.12
ABCA4P78363 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
ABCA4P78363 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC14.29□□□□□ -0.12
ABCA4P78363 IGHV3-42-201ENST00000520410 361 ntBASIC14.29□□□□□ -0.12
ABCA4P78363 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC14.29□□□□□ -0.12
ABCA4P78363 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
ABCA4P78363 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
ABCA4P78363 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
ABCA4P78363 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
ABCA4P78363 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
ABCA4P78363 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
ABCA4P78363 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC14.28□□□□□ -0.12
ABCA4P78363 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC14.28□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms