Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
NEK3P51956 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
NEK3P51956 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
NEK3P51956 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
NEK3P51956 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
NEK3P51956 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
NEK3P51956 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
NEK3P51956 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
NEK3P51956 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
NEK3P51956 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
NEK3P51956 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
NEK3P51956 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
NEK3P51956 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC17.21■□□□□ 0.35
NEK3P51956 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC17.21■□□□□ 0.35
NEK3P51956 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
NEK3P51956 MYB-242ENST00000618728 3545 ntTSL 5 BASIC17.21■□□□□ 0.35
NEK3P51956 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC17.21■□□□□ 0.35
NEK3P51956 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
NEK3P51956 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
NEK3P51956 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
NEK3P51956 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
NEK3P51956 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
NEK3P51956 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC17.21■□□□□ 0.35
NEK3P51956 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
NEK3P51956 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC17.21■□□□□ 0.35
NEK3P51956 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
NEK3P51956 GPX1P2-201ENST00000429271 606 ntBASIC17.21■□□□□ 0.35
NEK3P51956 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
NEK3P51956 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC17.21■□□□□ 0.35
NEK3P51956 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC17.21■□□□□ 0.35
NEK3P51956 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC17.21■□□□□ 0.35
NEK3P51956 COX5A-206ENST00000568783 571 ntTSL 3 BASIC17.21■□□□□ 0.35
NEK3P51956 MIR3687-2-201ENST00000577708 61 ntBASIC17.21■□□□□ 0.35
NEK3P51956 MTDHP5-201ENST00000598980 586 ntBASIC17.21■□□□□ 0.35
NEK3P51956 MIR3687-1-201ENST00000614492 61 ntBASIC17.21■□□□□ 0.35
NEK3P51956 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
NEK3P51956 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC17.21■□□□□ 0.35
NEK3P51956 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC17.21■□□□□ 0.35
NEK3P51956 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
NEK3P51956 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
NEK3P51956 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC17.21■□□□□ 0.35
NEK3P51956 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
NEK3P51956 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC17.21■□□□□ 0.35
NEK3P51956 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC17.21■□□□□ 0.35
NEK3P51956 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC17.21■□□□□ 0.35
NEK3P51956 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
NEK3P51956 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
NEK3P51956 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.34
NEK3P51956 HYMAI-201ENST00000635591 3347 ntBASIC17.21■□□□□ 0.34
NEK3P51956 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.34
NEK3P51956 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC17.21■□□□□ 0.34
NEK3P51956 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
NEK3P51956 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
NEK3P51956 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
NEK3P51956 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC17.2■□□□□ 0.34
NEK3P51956 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC17.2■□□□□ 0.34
NEK3P51956 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
NEK3P51956 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC17.2■□□□□ 0.34
NEK3P51956 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC17.2■□□□□ 0.34
NEK3P51956 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
NEK3P51956 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC17.2■□□□□ 0.34
NEK3P51956 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
NEK3P51956 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
NEK3P51956 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC17.2■□□□□ 0.34
NEK3P51956 AC087163.2-201ENST00000457299 853 ntBASIC17.2■□□□□ 0.34
NEK3P51956 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC17.2■□□□□ 0.34
NEK3P51956 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC17.2■□□□□ 0.34
NEK3P51956 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC17.2■□□□□ 0.34
NEK3P51956 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC17.2■□□□□ 0.34
NEK3P51956 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC17.2■□□□□ 0.34
NEK3P51956 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC17.2■□□□□ 0.34
NEK3P51956 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC17.2■□□□□ 0.34
NEK3P51956 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC17.2■□□□□ 0.34
NEK3P51956 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
NEK3P51956 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
NEK3P51956 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
NEK3P51956 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC17.2■□□□□ 0.34
NEK3P51956 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC17.2■□□□□ 0.34
NEK3P51956 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
NEK3P51956 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
NEK3P51956 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
NEK3P51956 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
NEK3P51956 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
NEK3P51956 AL662844.4-201ENST00000606367 2838 ntBASIC17.2■□□□□ 0.34
NEK3P51956 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
NEK3P51956 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC17.2■□□□□ 0.34
NEK3P51956 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC17.2■□□□□ 0.34
NEK3P51956 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
NEK3P51956 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
NEK3P51956 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
NEK3P51956 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC17.19■□□□□ 0.34
NEK3P51956 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC17.19■□□□□ 0.34
NEK3P51956 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
NEK3P51956 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
NEK3P51956 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
NEK3P51956 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
NEK3P51956 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC17.19■□□□□ 0.34
NEK3P51956 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
NEK3P51956 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC17.19■□□□□ 0.34
NEK3P51956 RPSAP43-201ENST00000402237 625 ntBASIC17.19■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 49.8 ms