Protein–RNA interactions for Protein: P18887

XRCC1, DNA repair protein XRCC1, humanhuman

Predicted RBP Predictions only

Length 633 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC1P18887 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
XRCC1P18887 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
XRCC1P18887 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
XRCC1P18887 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC16.67■□□□□ 0.26
XRCC1P18887 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
XRCC1P18887 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC16.67■□□□□ 0.26
XRCC1P18887 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC16.67■□□□□ 0.26
XRCC1P18887 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
XRCC1P18887 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC16.67■□□□□ 0.26
XRCC1P18887 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
XRCC1P18887 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC16.67■□□□□ 0.26
XRCC1P18887 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
XRCC1P18887 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC16.66■□□□□ 0.26
XRCC1P18887 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
XRCC1P18887 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
XRCC1P18887 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
XRCC1P18887 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
XRCC1P18887 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
XRCC1P18887 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
XRCC1P18887 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
XRCC1P18887 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
XRCC1P18887 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
XRCC1P18887 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
XRCC1P18887 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC16.66■□□□□ 0.26
XRCC1P18887 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC16.66■□□□□ 0.26
XRCC1P18887 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
XRCC1P18887 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
XRCC1P18887 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
XRCC1P18887 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
XRCC1P18887 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
XRCC1P18887 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
XRCC1P18887 RHOQP3-201ENST00000437982 621 ntBASIC16.66■□□□□ 0.26
XRCC1P18887 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC16.66■□□□□ 0.26
XRCC1P18887 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
XRCC1P18887 AC103702.1-201ENST00000548801 2630 ntBASIC16.66■□□□□ 0.26
XRCC1P18887 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC16.66■□□□□ 0.26
XRCC1P18887 MTDHP5-201ENST00000598980 586 ntBASIC16.66■□□□□ 0.26
XRCC1P18887 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC16.66■□□□□ 0.26
XRCC1P18887 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
XRCC1P18887 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
XRCC1P18887 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
XRCC1P18887 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC16.66■□□□□ 0.26
XRCC1P18887 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
XRCC1P18887 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
XRCC1P18887 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
XRCC1P18887 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
XRCC1P18887 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
XRCC1P18887 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
XRCC1P18887 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
XRCC1P18887 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
XRCC1P18887 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
XRCC1P18887 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
XRCC1P18887 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
XRCC1P18887 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC16.65■□□□□ 0.26
XRCC1P18887 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
XRCC1P18887 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
XRCC1P18887 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC16.65■□□□□ 0.26
XRCC1P18887 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC16.65■□□□□ 0.26
XRCC1P18887 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
XRCC1P18887 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
XRCC1P18887 UPF3AP3-201ENST00000420996 769 ntBASIC16.65■□□□□ 0.26
XRCC1P18887 MCCD1P2-201ENST00000423228 335 ntBASIC16.65■□□□□ 0.26
XRCC1P18887 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC16.65■□□□□ 0.26
XRCC1P18887 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
XRCC1P18887 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC16.65■□□□□ 0.26
XRCC1P18887 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC16.65■□□□□ 0.26
XRCC1P18887 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC16.65■□□□□ 0.26
XRCC1P18887 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC16.65■□□□□ 0.26
XRCC1P18887 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC16.65■□□□□ 0.26
XRCC1P18887 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
XRCC1P18887 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC16.65■□□□□ 0.26
XRCC1P18887 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC16.65■□□□□ 0.26
XRCC1P18887 HOTTIP_1.1-201ENST00000620415 57 ntBASIC16.65■□□□□ 0.26
XRCC1P18887 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC16.65■□□□□ 0.26
XRCC1P18887 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
XRCC1P18887 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
XRCC1P18887 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC16.65■□□□□ 0.26
XRCC1P18887 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
XRCC1P18887 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC16.65■□□□□ 0.26
XRCC1P18887 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
XRCC1P18887 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC16.65■□□□□ 0.26
XRCC1P18887 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
XRCC1P18887 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
XRCC1P18887 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
XRCC1P18887 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
XRCC1P18887 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
XRCC1P18887 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC16.64■□□□□ 0.26
XRCC1P18887 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
XRCC1P18887 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
XRCC1P18887 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
XRCC1P18887 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.25
XRCC1P18887 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC16.64■□□□□ 0.25
XRCC1P18887 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
XRCC1P18887 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC16.64■□□□□ 0.25
XRCC1P18887 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
XRCC1P18887 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
XRCC1P18887 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC16.64■□□□□ 0.25
XRCC1P18887 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
XRCC1P18887 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
XRCC1P18887 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms