Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
HMGA1P17096 AC061975.2-201ENST00000581722 295 ntBASIC17.15■□□□□ 0.34
HMGA1P17096 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC17.15■□□□□ 0.34
HMGA1P17096 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC17.15■□□□□ 0.34
HMGA1P17096 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
HMGA1P17096 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC17.15■□□□□ 0.34
HMGA1P17096 YTHDF3-AS1-201ENST00000603538 718 ntBASIC17.15■□□□□ 0.34
HMGA1P17096 AC008761.3-201ENST00000624803 892 ntBASIC17.15■□□□□ 0.34
HMGA1P17096 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
HMGA1P17096 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC17.15■□□□□ 0.34
HMGA1P17096 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
HMGA1P17096 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC17.15■□□□□ 0.34
HMGA1P17096 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
HMGA1P17096 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
HMGA1P17096 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC17.15■□□□□ 0.34
HMGA1P17096 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC17.15■□□□□ 0.34
HMGA1P17096 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
HMGA1P17096 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
HMGA1P17096 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC17.15■□□□□ 0.34
HMGA1P17096 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
HMGA1P17096 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC17.14■□□□□ 0.34
HMGA1P17096 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
HMGA1P17096 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
HMGA1P17096 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
HMGA1P17096 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
HMGA1P17096 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
HMGA1P17096 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
HMGA1P17096 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
HMGA1P17096 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
HMGA1P17096 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
HMGA1P17096 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
HMGA1P17096 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
HMGA1P17096 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
HMGA1P17096 MTND6P24-201ENST00000440466 518 ntBASIC17.14■□□□□ 0.33
HMGA1P17096 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
HMGA1P17096 POLD4-211ENST00000539074 714 ntTSL 3 BASIC17.14■□□□□ 0.33
HMGA1P17096 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
HMGA1P17096 TEX28P1-201ENST00000613479 1221 ntBASIC17.14■□□□□ 0.33
HMGA1P17096 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC17.14■□□□□ 0.33
HMGA1P17096 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC17.14■□□□□ 0.33
HMGA1P17096 TEX28P2-201ENST00000617764 1221 ntBASIC17.14■□□□□ 0.33
HMGA1P17096 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
HMGA1P17096 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
HMGA1P17096 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
HMGA1P17096 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC17.14■□□□□ 0.33
HMGA1P17096 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
HMGA1P17096 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
HMGA1P17096 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
HMGA1P17096 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC17.14■□□□□ 0.33
HMGA1P17096 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
HMGA1P17096 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC17.14■□□□□ 0.33
HMGA1P17096 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC17.14■□□□□ 0.33
HMGA1P17096 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HMGA1P17096 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC17.13■□□□□ 0.33
HMGA1P17096 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
HMGA1P17096 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC17.13■□□□□ 0.33
HMGA1P17096 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
HMGA1P17096 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HMGA1P17096 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC17.13■□□□□ 0.33
HMGA1P17096 RELA-227ENST00000615805 2236 ntTSL 5 BASIC17.13■□□□□ 0.33
HMGA1P17096 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
HMGA1P17096 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC17.13■□□□□ 0.33
HMGA1P17096 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC17.13■□□□□ 0.33
HMGA1P17096 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
HMGA1P17096 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC17.13■□□□□ 0.33
HMGA1P17096 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC17.13■□□□□ 0.33
HMGA1P17096 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
HMGA1P17096 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC17.13■□□□□ 0.33
HMGA1P17096 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
HMGA1P17096 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
HMGA1P17096 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HMGA1P17096 HNRNPA3P1-201ENST00000401429 1139 ntBASIC17.13■□□□□ 0.33
HMGA1P17096 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC17.13■□□□□ 0.33
HMGA1P17096 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC17.13■□□□□ 0.33
HMGA1P17096 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC17.13■□□□□ 0.33
HMGA1P17096 HNRNPA3P5-201ENST00000455201 833 ntBASIC17.13■□□□□ 0.33
HMGA1P17096 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC17.13■□□□□ 0.33
HMGA1P17096 TERF1P3-201ENST00000505638 1227 ntBASIC17.13■□□□□ 0.33
HMGA1P17096 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC17.13■□□□□ 0.33
HMGA1P17096 AL589739.1-201ENST00000607720 493 ntBASIC17.13■□□□□ 0.33
HMGA1P17096 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HMGA1P17096 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC17.13■□□□□ 0.33
HMGA1P17096 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
HMGA1P17096 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HMGA1P17096 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
HMGA1P17096 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC17.13■□□□□ 0.33
HMGA1P17096 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HMGA1P17096 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC17.13■□□□□ 0.33
HMGA1P17096 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
HMGA1P17096 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC17.13■□□□□ 0.33
HMGA1P17096 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
HMGA1P17096 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
HMGA1P17096 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC17.13■□□□□ 0.33
HMGA1P17096 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
HMGA1P17096 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
HMGA1P17096 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
HMGA1P17096 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
HMGA1P17096 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC17.12■□□□□ 0.33
HMGA1P17096 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HMGA1P17096 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC17.12■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 43.7 ms