Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
VCANP13611 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
VCANP13611 GAD1-203ENST00000375272 1252 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
VCANP13611 SNHG17-201ENST00000413755 648 ntTSL 3 BASIC16.97■□□□□ 0.31
VCANP13611 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC16.97■□□□□ 0.31
VCANP13611 FKBP11-212ENST00000552878 1052 ntAPPRIS ALT2 TSL 2 BASIC16.97■□□□□ 0.31
VCANP13611 SPAG5-AS1-203ENST00000554154 491 ntTSL 2 BASIC16.97■□□□□ 0.31
VCANP13611 AC006480.2-201ENST00000609770 1337 ntBASIC16.97■□□□□ 0.31
VCANP13611 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC16.97■□□□□ 0.31
VCANP13611 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC16.97■□□□□ 0.31
VCANP13611 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
VCANP13611 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
VCANP13611 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
VCANP13611 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
VCANP13611 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
VCANP13611 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
VCANP13611 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC16.97■□□□□ 0.31
VCANP13611 PSME1-201ENST00000206451 1006 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
VCANP13611 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
VCANP13611 AL591846.1-201ENST00000451736 433 ntBASIC16.97■□□□□ 0.31
VCANP13611 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC16.97■□□□□ 0.31
VCANP13611 LRRC37A6P-204ENST00000575554 573 ntTSL 3 BASIC16.97■□□□□ 0.31
VCANP13611 AC005357.2-202ENST00000590507 1060 ntBASIC16.97■□□□□ 0.31
VCANP13611 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
VCANP13611 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
VCANP13611 AC073592.3-201ENST00000625118 1834 ntBASIC16.97■□□□□ 0.31
VCANP13611 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
VCANP13611 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
VCANP13611 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
VCANP13611 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC16.96■□□□□ 0.31
VCANP13611 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
VCANP13611 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
VCANP13611 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
VCANP13611 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
VCANP13611 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
VCANP13611 MGST3-203ENST00000367885 680 ntTSL 2 BASIC16.96■□□□□ 0.31
VCANP13611 RN7SL818P-201ENST00000485099 259 ntBASIC16.96■□□□□ 0.31
VCANP13611 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC16.96■□□□□ 0.31
VCANP13611 RN7SL725P-201ENST00000606439 259 ntBASIC16.96■□□□□ 0.31
VCANP13611 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
VCANP13611 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC16.96■□□□□ 0.31
VCANP13611 PRYP6-201ENST00000514804 343 ntBASIC16.96■□□□□ 0.31
VCANP13611 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC16.96■□□□□ 0.31
VCANP13611 KRT8P12-202ENST00000472924 1397 ntBASIC16.96■□□□□ 0.31
VCANP13611 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC16.96■□□□□ 0.31
VCANP13611 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
VCANP13611 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
VCANP13611 GOLGA2P9-201ENST00000596977 1937 ntBASIC16.96■□□□□ 0.31
VCANP13611 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
VCANP13611 APOA1-205ENST00000375329 927 ntTSL 2 BASIC16.95■□□□□ 0.3
VCANP13611 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC16.95■□□□□ 0.3
VCANP13611 AC104241.2-201ENST00000532748 789 ntTSL 3 BASIC16.95■□□□□ 0.3
VCANP13611 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
VCANP13611 ZNF581-203ENST00000587252 1324 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
VCANP13611 ATF5-205ENST00000600336 682 ntTSL 2 BASIC16.95■□□□□ 0.3
VCANP13611 AC012317.2-201ENST00000623305 2251 ntBASIC16.95■□□□□ 0.3
VCANP13611 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
VCANP13611 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
VCANP13611 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC16.95■□□□□ 0.3
VCANP13611 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC16.95■□□□□ 0.3
VCANP13611 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC16.95■□□□□ 0.3
VCANP13611 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC16.95■□□□□ 0.3
VCANP13611 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
VCANP13611 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC16.95■□□□□ 0.3
VCANP13611 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
VCANP13611 MRAS-205ENST00000474559 856 ntAPPRIS P1 TSL 3 BASIC16.95■□□□□ 0.3
VCANP13611 GATD1-205ENST00000524550 995 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
VCANP13611 GNRHR2-203ENST00000581100 1187 ntBASIC16.95■□□□□ 0.3
VCANP13611 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC16.95■□□□□ 0.3
VCANP13611 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC16.95■□□□□ 0.3
VCANP13611 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
VCANP13611 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC16.95■□□□□ 0.3
VCANP13611 KRT8P22-201ENST00000562317 1415 ntBASIC16.95■□□□□ 0.3
VCANP13611 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC16.95■□□□□ 0.3
VCANP13611 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
VCANP13611 IGHV3-49-201ENST00000390625 439 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
VCANP13611 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC16.95■□□□□ 0.3
VCANP13611 RBM39-205ENST00000397370 612 ntTSL 2 BASIC16.95■□□□□ 0.3
VCANP13611 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC16.95■□□□□ 0.3
VCANP13611 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC16.95■□□□□ 0.3
VCANP13611 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
VCANP13611 TDH-203ENST00000531764 1110 ntBASIC16.95■□□□□ 0.3
VCANP13611 WT1-AS_2.1-201ENST00000613208 137 ntBASIC16.95■□□□□ 0.3
VCANP13611 AC244452.3-201ENST00000636814 210 ntBASIC16.95■□□□□ 0.3
VCANP13611 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
VCANP13611 AL031598.1-201ENST00000561511 1773 ntBASIC16.95■□□□□ 0.3
VCANP13611 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
VCANP13611 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
VCANP13611 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
VCANP13611 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC16.95■□□□□ 0.3
VCANP13611 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC16.94■□□□□ 0.3
VCANP13611 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC16.94■□□□□ 0.3
VCANP13611 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
VCANP13611 KLK1-201ENST00000301420 866 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
VCANP13611 VPS29-201ENST00000360579 1091 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
VCANP13611 UFM1-202ENST00000379649 846 ntTSL 4 BASIC16.94■□□□□ 0.3
VCANP13611 CCDC153-204ENST00000503566 1295 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
VCANP13611 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC16.94■□□□□ 0.3
VCANP13611 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
VCANP13611 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC16.94■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 75.3 ms