Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
PCNAP12004 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC16.31■□□□□ 0.2
PCNAP12004 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
PCNAP12004 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC16.31■□□□□ 0.2
PCNAP12004 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
PCNAP12004 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
PCNAP12004 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC16.31■□□□□ 0.2
PCNAP12004 AL391256.1-201ENST00000443260 1855 ntBASIC16.31■□□□□ 0.2
PCNAP12004 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PCNAP12004 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
PCNAP12004 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PCNAP12004 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC16.3■□□□□ 0.2
PCNAP12004 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PCNAP12004 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
PCNAP12004 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
PCNAP12004 KRT8P49-201ENST00000604166 1432 ntBASIC16.3■□□□□ 0.2
PCNAP12004 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
PCNAP12004 PGR-209ENST00000617858 2816 ntTSL 5 BASIC16.3■□□□□ 0.2
PCNAP12004 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
PCNAP12004 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC16.3■□□□□ 0.2
PCNAP12004 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC16.3■□□□□ 0.2
PCNAP12004 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
PCNAP12004 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC16.3■□□□□ 0.2
PCNAP12004 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC16.3■□□□□ 0.2
PCNAP12004 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PCNAP12004 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
PCNAP12004 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC16.3■□□□□ 0.2
PCNAP12004 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC16.3■□□□□ 0.2
PCNAP12004 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC16.3■□□□□ 0.2
PCNAP12004 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
PCNAP12004 MOK-208ENST00000519058 917 ntTSL 2 BASIC16.3■□□□□ 0.2
PCNAP12004 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC16.3■□□□□ 0.2
PCNAP12004 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
PCNAP12004 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC16.3■□□□□ 0.2
PCNAP12004 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC16.3■□□□□ 0.2
PCNAP12004 MIR1199-201ENST00000621445 119 ntBASIC16.3■□□□□ 0.2
PCNAP12004 AL691432.3-201ENST00000621860 400 ntBASIC16.3■□□□□ 0.2
PCNAP12004 ABBA01031661.1-201ENST00000634362 1253 ntBASIC16.3■□□□□ 0.2
PCNAP12004 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
PCNAP12004 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
PCNAP12004 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
PCNAP12004 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
PCNAP12004 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC16.3■□□□□ 0.2
PCNAP12004 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
PCNAP12004 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC16.3■□□□□ 0.2
PCNAP12004 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PCNAP12004 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
PCNAP12004 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC16.3■□□□□ 0.2
PCNAP12004 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC16.29■□□□□ 0.2
PCNAP12004 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
PCNAP12004 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC16.29■□□□□ 0.2
PCNAP12004 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
PCNAP12004 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC16.29■□□□□ 0.2
PCNAP12004 TSPY26P-202ENST00000565928 3884 ntBASIC16.29■□□□□ 0.2
PCNAP12004 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
PCNAP12004 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
PCNAP12004 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
PCNAP12004 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
PCNAP12004 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
PCNAP12004 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
PCNAP12004 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC16.29■□□□□ 0.2
PCNAP12004 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
PCNAP12004 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
PCNAP12004 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
PCNAP12004 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC16.29■□□□□ 0.2
PCNAP12004 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
PCNAP12004 INIP-202ENST00000374236 874 ntTSL 2 BASIC16.29■□□□□ 0.2
PCNAP12004 PAWRP1-201ENST00000451083 565 ntBASIC16.29■□□□□ 0.2
PCNAP12004 AC087163.2-201ENST00000457299 853 ntBASIC16.29■□□□□ 0.2
PCNAP12004 RPS15P9-201ENST00000494093 319 ntBASIC16.29■□□□□ 0.2
PCNAP12004 PP7080-204ENST00000510714 601 ntTSL 3 BASIC16.29■□□□□ 0.2
PCNAP12004 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC16.29■□□□□ 0.2
PCNAP12004 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC16.29■□□□□ 0.2
PCNAP12004 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
PCNAP12004 AL805961.1-202ENST00000641562 540 ntBASIC16.29■□□□□ 0.2
PCNAP12004 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
PCNAP12004 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
PCNAP12004 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
PCNAP12004 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
PCNAP12004 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
PCNAP12004 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC16.29■□□□□ 0.2
PCNAP12004 GCK-209ENST00000616242 2260 ntTSL 5 BASIC16.29■□□□□ 0.2
PCNAP12004 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
PCNAP12004 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
PCNAP12004 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
PCNAP12004 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
PCNAP12004 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC16.28■□□□□ 0.2
PCNAP12004 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
PCNAP12004 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
PCNAP12004 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
PCNAP12004 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
PCNAP12004 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC16.28■□□□□ 0.2
PCNAP12004 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
PCNAP12004 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
PCNAP12004 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC16.28■□□□□ 0.2
PCNAP12004 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
PCNAP12004 AC026691.1-201ENST00000602502 2017 ntBASIC16.28■□□□□ 0.2
PCNAP12004 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
PCNAP12004 LINC00554-201ENST00000564841 3011 ntBASIC16.28■□□□□ 0.2
PCNAP12004 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC16.28■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 42.4 ms