Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
VIMP08670 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
VIMP08670 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
VIMP08670 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
VIMP08670 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
VIMP08670 ECEL1P2-202ENST00000465689 757 ntBASIC16.82■□□□□ 0.28
VIMP08670 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
VIMP08670 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC16.82■□□□□ 0.28
VIMP08670 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC16.82■□□□□ 0.28
VIMP08670 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC16.82■□□□□ 0.28
VIMP08670 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
VIMP08670 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
VIMP08670 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
VIMP08670 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
VIMP08670 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
VIMP08670 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
VIMP08670 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC16.82■□□□□ 0.28
VIMP08670 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
VIMP08670 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
VIMP08670 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC16.82■□□□□ 0.28
VIMP08670 GGT4P-201ENST00000623672 1708 ntBASIC16.82■□□□□ 0.28
VIMP08670 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
VIMP08670 SMARCA4-207ENST00000541122 5139 ntAPPRIS P4 TSL 5 BASIC16.82■□□□□ 0.28
VIMP08670 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
VIMP08670 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
VIMP08670 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
VIMP08670 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC16.81■□□□□ 0.28
VIMP08670 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
VIMP08670 AC006449.6-201ENST00000612330 2296 ntBASIC16.81■□□□□ 0.28
VIMP08670 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
VIMP08670 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
VIMP08670 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC16.81■□□□□ 0.28
VIMP08670 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
VIMP08670 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC16.81■□□□□ 0.28
VIMP08670 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
VIMP08670 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
VIMP08670 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
VIMP08670 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
VIMP08670 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
VIMP08670 MDFI-202ENST00000373050 809 ntTSL 2 BASIC16.81■□□□□ 0.28
VIMP08670 MIR1238-201ENST00000408483 83 ntBASIC16.81■□□□□ 0.28
VIMP08670 AC007967.3-201ENST00000434308 558 ntBASIC16.81■□□□□ 0.28
VIMP08670 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC16.81■□□□□ 0.28
VIMP08670 AC128688.1-201ENST00000487626 519 ntBASIC16.81■□□□□ 0.28
VIMP08670 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
VIMP08670 EGLN1P1-201ENST00000531623 762 ntBASIC16.81■□□□□ 0.28
VIMP08670 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC16.81■□□□□ 0.28
VIMP08670 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC16.81■□□□□ 0.28
VIMP08670 STK25P1-201ENST00000585406 838 ntBASIC16.81■□□□□ 0.28
VIMP08670 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
VIMP08670 AC079602.3-201ENST00000623931 403 ntBASIC16.81■□□□□ 0.28
VIMP08670 EIF4G1-212ENST00000424196 5653 ntTSL 2 BASIC16.81■□□□□ 0.28
VIMP08670 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
VIMP08670 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
VIMP08670 ZNF280D-207ENST00000559237 4902 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
VIMP08670 SYT17-201ENST00000355377 3081 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
VIMP08670 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
VIMP08670 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
VIMP08670 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
VIMP08670 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
VIMP08670 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
VIMP08670 ADAMTS14-202ENST00000373208 5269 ntAPPRIS P4 TSL 2 BASIC16.81■□□□□ 0.28
VIMP08670 CPEB2-209ENST00000538197 6878 ntAPPRIS P4 TSL 5 BASIC16.81■□□□□ 0.28
VIMP08670 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC16.81■□□□□ 0.28
VIMP08670 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
VIMP08670 LINC00895-201ENST00000629028 1637 ntBASIC16.81■□□□□ 0.28
VIMP08670 AL049757.1-201ENST00000616842 1596 ntBASIC16.81■□□□□ 0.28
VIMP08670 OR2I1P-210ENST00000642037 4691 ntBASIC16.81■□□□□ 0.28
VIMP08670 PPL-201ENST00000345988 6238 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
VIMP08670 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
VIMP08670 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC16.8■□□□□ 0.28
VIMP08670 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC16.8■□□□□ 0.28
VIMP08670 PPL-205ENST00000590782 5845 ntAPPRIS ALT1 TSL 5 BASIC16.8■□□□□ 0.28
VIMP08670 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VIMP08670 RUNDC1-201ENST00000361677 3828 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VIMP08670 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
VIMP08670 AL353692.3-201ENST00000407031 1396 ntBASIC16.8■□□□□ 0.28
VIMP08670 MTA3-203ENST00000406652 5484 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
VIMP08670 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
VIMP08670 FEM1B-201ENST00000306917 7122 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VIMP08670 KDM2B-201ENST00000377069 5224 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
VIMP08670 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VIMP08670 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VIMP08670 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC16.8■□□□□ 0.28
VIMP08670 DENND3-207ENST00000518347 850 ntTSL 2 BASIC16.8■□□□□ 0.28
VIMP08670 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC16.8■□□□□ 0.28
VIMP08670 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC16.8■□□□□ 0.28
VIMP08670 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC16.8■□□□□ 0.28
VIMP08670 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC16.8■□□□□ 0.28
VIMP08670 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC16.8■□□□□ 0.28
VIMP08670 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VIMP08670 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC16.8■□□□□ 0.28
VIMP08670 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VIMP08670 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
VIMP08670 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VIMP08670 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC16.8■□□□□ 0.28
VIMP08670 LINC00639-201ENST00000553932 4496 ntTSL 2 BASIC16.8■□□□□ 0.28
VIMP08670 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VIMP08670 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VIMP08670 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC16.8■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms