Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC12.6□□□□□ -0.39
HLA-DQA1P01909 GTPBP1-201ENST00000216044 5126 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
HLA-DQA1P01909 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC12.6□□□□□ -0.39
HLA-DQA1P01909 AC104836.1-202ENST00000636805 6041 ntAPPRIS P1 TSL 5 BASIC12.6□□□□□ -0.39
HLA-DQA1P01909 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
HLA-DQA1P01909 ZNF655-212ENST00000424881 4666 ntAPPRIS ALT2 TSL 2 BASIC12.59□□□□□ -0.39
HLA-DQA1P01909 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC12.59□□□□□ -0.39
HLA-DQA1P01909 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC12.59□□□□□ -0.39
HLA-DQA1P01909 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC12.59□□□□□ -0.39
HLA-DQA1P01909 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
HLA-DQA1P01909 SLC25A38-201ENST00000273158 2123 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
HLA-DQA1P01909 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
HLA-DQA1P01909 MEGF11-203ENST00000409699 6163 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
HLA-DQA1P01909 AC006449.6-201ENST00000612330 2296 ntBASIC12.59□□□□□ -0.39
HLA-DQA1P01909 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
HLA-DQA1P01909 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
HLA-DQA1P01909 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC12.59□□□□□ -0.39
HLA-DQA1P01909 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC12.59□□□□□ -0.39
HLA-DQA1P01909 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
HLA-DQA1P01909 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC12.59□□□□□ -0.39
HLA-DQA1P01909 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC12.59□□□□□ -0.39
HLA-DQA1P01909 FAM219A-204ENST00000379081 3543 ntTSL 5 BASIC12.59□□□□□ -0.39
HLA-DQA1P01909 APOLD1-201ENST00000326765 4724 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
HLA-DQA1P01909 PODN-202ENST00000371500 3287 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
HLA-DQA1P01909 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC12.59□□□□□ -0.39
HLA-DQA1P01909 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC12.59□□□□□ -0.39
HLA-DQA1P01909 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
HLA-DQA1P01909 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC12.59□□□□□ -0.39
HLA-DQA1P01909 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
HLA-DQA1P01909 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC12.59□□□□□ -0.39
HLA-DQA1P01909 RBM17P1-201ENST00000453646 1190 ntBASIC12.59□□□□□ -0.39
HLA-DQA1P01909 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC12.59□□□□□ -0.39
HLA-DQA1P01909 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC12.59□□□□□ -0.39
HLA-DQA1P01909 MIR4497-201ENST00000583208 89 ntBASIC12.59□□□□□ -0.39
HLA-DQA1P01909 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC12.59□□□□□ -0.39
HLA-DQA1P01909 ITSN1-212ENST00000399367 5722 ntAPPRIS ALT1 TSL 1 (best) BASIC12.59□□□□□ -0.39
HLA-DQA1P01909 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC12.59□□□□□ -0.39
HLA-DQA1P01909 NF2-205ENST00000361452 5884 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
HLA-DQA1P01909 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
HLA-DQA1P01909 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC12.59□□□□□ -0.39
HLA-DQA1P01909 POLL-217ENST00000628479 1953 ntTSL 5 BASIC12.59□□□□□ -0.39
HLA-DQA1P01909 CNPY1-203ENST00000636372 2259 ntAPPRIS ALT2 TSL 5 BASIC12.59□□□□□ -0.39
HLA-DQA1P01909 GGT4P-201ENST00000623672 1708 ntBASIC12.59□□□□□ -0.39
HLA-DQA1P01909 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
HLA-DQA1P01909 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
HLA-DQA1P01909 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC12.59□□□□□ -0.39
HLA-DQA1P01909 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
HLA-DQA1P01909 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC12.59□□□□□ -0.39
HLA-DQA1P01909 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC12.59□□□□□ -0.39
HLA-DQA1P01909 GPR89P-201ENST00000407924 1495 ntBASIC12.59□□□□□ -0.39
HLA-DQA1P01909 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC12.59□□□□□ -0.39
HLA-DQA1P01909 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC12.59□□□□□ -0.39
HLA-DQA1P01909 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
HLA-DQA1P01909 CAMSAP3-202ENST00000446248 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
HLA-DQA1P01909 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.39
HLA-DQA1P01909 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.39
HLA-DQA1P01909 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC12.58□□□□□ -0.39
HLA-DQA1P01909 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC12.58□□□□□ -0.39
HLA-DQA1P01909 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC12.58□□□□□ -0.39
HLA-DQA1P01909 TMEM30B-202ENST00000555868 4471 ntAPPRIS P1 BASIC12.58□□□□□ -0.39
HLA-DQA1P01909 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC12.58□□□□□ -0.39
HLA-DQA1P01909 B4GALNT3-201ENST00000266383 5068 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.39
HLA-DQA1P01909 TEX13C-201ENST00000632600 5095 ntAPPRIS P1 BASIC12.58□□□□□ -0.39
HLA-DQA1P01909 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC12.58□□□□□ -0.39
HLA-DQA1P01909 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC12.58□□□□□ -0.39
HLA-DQA1P01909 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC12.58□□□□□ -0.4
HLA-DQA1P01909 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
HLA-DQA1P01909 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.4
HLA-DQA1P01909 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
HLA-DQA1P01909 R3HDM2P2-201ENST00000401880 2116 ntBASIC12.58□□□□□ -0.4
HLA-DQA1P01909 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC12.58□□□□□ -0.4
HLA-DQA1P01909 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC12.58□□□□□ -0.4
HLA-DQA1P01909 MCL1-202ENST00000369026 3932 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
HLA-DQA1P01909 ADAMTS14-201ENST00000373207 5260 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
HLA-DQA1P01909 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC12.58□□□□□ -0.4
HLA-DQA1P01909 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
HLA-DQA1P01909 SPEG-205ENST00000396698 3379 ntTSL 5 BASIC12.58□□□□□ -0.4
HLA-DQA1P01909 MIR1238-201ENST00000408483 83 ntBASIC12.58□□□□□ -0.4
HLA-DQA1P01909 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC12.58□□□□□ -0.4
HLA-DQA1P01909 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
HLA-DQA1P01909 AL390955.1-201ENST00000428694 934 ntBASIC12.58□□□□□ -0.4
HLA-DQA1P01909 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
HLA-DQA1P01909 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC12.58□□□□□ -0.4
HLA-DQA1P01909 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC12.58□□□□□ -0.4
HLA-DQA1P01909 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC12.58□□□□□ -0.4
HLA-DQA1P01909 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC12.58□□□□□ -0.4
HLA-DQA1P01909 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC12.58□□□□□ -0.4
HLA-DQA1P01909 TMED1-207ENST00000591695 809 ntTSL 5 BASIC12.58□□□□□ -0.4
HLA-DQA1P01909 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
HLA-DQA1P01909 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC12.58□□□□□ -0.4
HLA-DQA1P01909 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC12.58□□□□□ -0.4
HLA-DQA1P01909 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC12.58□□□□□ -0.4
HLA-DQA1P01909 CR769767.2-201ENST00000622735 460 ntBASIC12.58□□□□□ -0.4
HLA-DQA1P01909 AC066615.1-201ENST00000640911 628 ntBASIC12.58□□□□□ -0.4
HLA-DQA1P01909 MBOAT2-201ENST00000305997 7751 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
HLA-DQA1P01909 CSRNP2-201ENST00000228515 4471 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
HLA-DQA1P01909 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
HLA-DQA1P01909 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC12.58□□□□□ -0.4
HLA-DQA1P01909 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
HLA-DQA1P01909 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms