Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC16.01■□□□□ 0.15
SEMA3DO95025 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC16.01■□□□□ 0.15
SEMA3DO95025 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
SEMA3DO95025 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
SEMA3DO95025 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC16.01■□□□□ 0.15
SEMA3DO95025 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC16.01■□□□□ 0.15
SEMA3DO95025 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
SEMA3DO95025 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC16.01■□□□□ 0.15
SEMA3DO95025 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
SEMA3DO95025 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
SEMA3DO95025 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC16.01■□□□□ 0.15
SEMA3DO95025 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC16.01■□□□□ 0.15
SEMA3DO95025 METTL26-205ENST00000397666 726 ntTSL 2 BASIC16.01■□□□□ 0.15
SEMA3DO95025 MRPL3P1-201ENST00000400109 1033 ntBASIC16.01■□□□□ 0.15
SEMA3DO95025 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC16.01■□□□□ 0.15
SEMA3DO95025 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC16.01■□□□□ 0.15
SEMA3DO95025 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC16.01■□□□□ 0.15
SEMA3DO95025 AP001005.1-201ENST00000571755 1248 ntBASIC16.01■□□□□ 0.15
SEMA3DO95025 SLC25A6P4-201ENST00000586535 553 ntBASIC16.01■□□□□ 0.15
SEMA3DO95025 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC16.01■□□□□ 0.15
SEMA3DO95025 CYP2A7P1-201ENST00000595391 815 ntBASIC16.01■□□□□ 0.15
SEMA3DO95025 AL049840.3-201ENST00000602669 611 ntBASIC16.01■□□□□ 0.15
SEMA3DO95025 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
SEMA3DO95025 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
SEMA3DO95025 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
SEMA3DO95025 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
SEMA3DO95025 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
SEMA3DO95025 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
SEMA3DO95025 LINC00554-201ENST00000564841 3011 ntBASIC16.01■□□□□ 0.15
SEMA3DO95025 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC16.01■□□□□ 0.15
SEMA3DO95025 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC16.01■□□□□ 0.15
SEMA3DO95025 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
SEMA3DO95025 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
SEMA3DO95025 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
SEMA3DO95025 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
SEMA3DO95025 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
SEMA3DO95025 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
SEMA3DO95025 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
SEMA3DO95025 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC16.01■□□□□ 0.15
SEMA3DO95025 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC16.01■□□□□ 0.15
SEMA3DO95025 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
SEMA3DO95025 ABR-203ENST00000536794 2213 ntTSL 2 BASIC16■□□□□ 0.15
SEMA3DO95025 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC16■□□□□ 0.15
SEMA3DO95025 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC16■□□□□ 0.15
SEMA3DO95025 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC16■□□□□ 0.15
SEMA3DO95025 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC16■□□□□ 0.15
SEMA3DO95025 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC16■□□□□ 0.15
SEMA3DO95025 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC16■□□□□ 0.15
SEMA3DO95025 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
SEMA3DO95025 DOC2GP-204ENST00000639052 2548 ntBASIC16■□□□□ 0.15
SEMA3DO95025 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC16■□□□□ 0.15
SEMA3DO95025 ME2-201ENST00000321341 9415 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
SEMA3DO95025 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
SEMA3DO95025 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
SEMA3DO95025 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC16■□□□□ 0.15
SEMA3DO95025 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
SEMA3DO95025 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
SEMA3DO95025 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
SEMA3DO95025 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
SEMA3DO95025 WDR53-204ENST00000433160 887 ntTSL 5 BASIC16■□□□□ 0.15
SEMA3DO95025 AC098831.1-202ENST00000438821 336 ntBASIC16■□□□□ 0.15
SEMA3DO95025 AC108751.1-201ENST00000490852 363 ntBASIC16■□□□□ 0.15
SEMA3DO95025 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC16■□□□□ 0.15
SEMA3DO95025 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC16■□□□□ 0.15
SEMA3DO95025 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC16■□□□□ 0.15
SEMA3DO95025 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC16■□□□□ 0.15
SEMA3DO95025 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC16■□□□□ 0.15
SEMA3DO95025 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC16■□□□□ 0.15
SEMA3DO95025 AC004790.2-201ENST00000623588 572 ntBASIC16■□□□□ 0.15
SEMA3DO95025 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
SEMA3DO95025 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
SEMA3DO95025 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
SEMA3DO95025 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC16■□□□□ 0.15
SEMA3DO95025 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
SEMA3DO95025 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
SEMA3DO95025 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC16■□□□□ 0.15
SEMA3DO95025 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC16■□□□□ 0.15
SEMA3DO95025 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
SEMA3DO95025 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
SEMA3DO95025 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC16■□□□□ 0.15
SEMA3DO95025 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC16■□□□□ 0.15
SEMA3DO95025 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
SEMA3DO95025 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC16■□□□□ 0.15
SEMA3DO95025 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC16■□□□□ 0.15
SEMA3DO95025 AC092171.3-201ENST00000610122 2651 ntBASIC16■□□□□ 0.15
SEMA3DO95025 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC16■□□□□ 0.15
SEMA3DO95025 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
SEMA3DO95025 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC15.99■□□□□ 0.15
SEMA3DO95025 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
SEMA3DO95025 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC15.99■□□□□ 0.15
SEMA3DO95025 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
SEMA3DO95025 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC15.99■□□□□ 0.15
SEMA3DO95025 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
SEMA3DO95025 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
SEMA3DO95025 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
SEMA3DO95025 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
SEMA3DO95025 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC15.99■□□□□ 0.15
SEMA3DO95025 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC15.99■□□□□ 0.15
SEMA3DO95025 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC15.99■□□□□ 0.15
SEMA3DO95025 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC15.99■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 37.3 ms