Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
SHOX2O60902 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
SHOX2O60902 FOS-208ENST00000555686 1496 ntTSL 2 BASIC16.71■□□□□ 0.27
SHOX2O60902 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
SHOX2O60902 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC16.71■□□□□ 0.27
SHOX2O60902 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC16.71■□□□□ 0.27
SHOX2O60902 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
SHOX2O60902 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC16.71■□□□□ 0.27
SHOX2O60902 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC16.71■□□□□ 0.27
SHOX2O60902 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC16.71■□□□□ 0.27
SHOX2O60902 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC16.71■□□□□ 0.27
SHOX2O60902 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
SHOX2O60902 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
SHOX2O60902 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
SHOX2O60902 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
SHOX2O60902 SPATS2L-209ENST00000409988 2698 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.26
SHOX2O60902 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC16.71■□□□□ 0.26
SHOX2O60902 PLEKHA4-201ENST00000263265 3088 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
SHOX2O60902 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC16.7■□□□□ 0.26
SHOX2O60902 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC16.7■□□□□ 0.26
SHOX2O60902 KRT8P49-201ENST00000604166 1432 ntBASIC16.7■□□□□ 0.26
SHOX2O60902 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC16.7■□□□□ 0.26
SHOX2O60902 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SHOX2O60902 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
SHOX2O60902 API5-202ENST00000420461 2009 ntTSL 2 BASIC16.7■□□□□ 0.26
SHOX2O60902 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
SHOX2O60902 VPS9D1-201ENST00000389386 2748 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
SHOX2O60902 WASH2P-202ENST00000538033 2800 ntTSL 2 BASIC16.7■□□□□ 0.26
SHOX2O60902 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SHOX2O60902 NXF1-213ENST00000532297 2795 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
SHOX2O60902 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
SHOX2O60902 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
SHOX2O60902 TOR2A-202ENST00000373281 2477 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
SHOX2O60902 DNAJB1-201ENST00000254322 2264 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SHOX2O60902 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
SHOX2O60902 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
SHOX2O60902 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
SHOX2O60902 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
SHOX2O60902 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC16.7■□□□□ 0.26
SHOX2O60902 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SHOX2O60902 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC16.7■□□□□ 0.26
SHOX2O60902 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
SHOX2O60902 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC16.7■□□□□ 0.26
SHOX2O60902 AC007967.3-201ENST00000434308 558 ntBASIC16.7■□□□□ 0.26
SHOX2O60902 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC16.7■□□□□ 0.26
SHOX2O60902 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC16.7■□□□□ 0.26
SHOX2O60902 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC16.7■□□□□ 0.26
SHOX2O60902 NT5C-210ENST00000582160 860 ntTSL 2 BASIC16.7■□□□□ 0.26
SHOX2O60902 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC16.7■□□□□ 0.26
SHOX2O60902 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC16.7■□□□□ 0.26
SHOX2O60902 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC16.7■□□□□ 0.26
SHOX2O60902 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC16.7■□□□□ 0.26
SHOX2O60902 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC16.7■□□□□ 0.26
SHOX2O60902 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC16.7■□□□□ 0.26
SHOX2O60902 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC16.7■□□□□ 0.26
SHOX2O60902 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
SHOX2O60902 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
SHOX2O60902 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC16.7■□□□□ 0.26
SHOX2O60902 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
SHOX2O60902 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC16.7■□□□□ 0.26
SHOX2O60902 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
SHOX2O60902 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC16.7■□□□□ 0.26
SHOX2O60902 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
SHOX2O60902 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC16.7■□□□□ 0.26
SHOX2O60902 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
SHOX2O60902 OSGIN1-201ENST00000343939 2391 ntTSL 2 BASIC16.7■□□□□ 0.26
SHOX2O60902 KRT8P10-201ENST00000450021 1447 ntBASIC16.7■□□□□ 0.26
SHOX2O60902 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SHOX2O60902 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
SHOX2O60902 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
SHOX2O60902 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC16.7■□□□□ 0.26
SHOX2O60902 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SHOX2O60902 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC16.69■□□□□ 0.26
SHOX2O60902 ICA1-207ENST00000406470 2440 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
SHOX2O60902 GSN-215ENST00000545652 2428 ntTSL 2 BASIC16.69■□□□□ 0.26
SHOX2O60902 PRSS30P-203ENST00000476276 2855 ntTSL 2 BASIC16.69■□□□□ 0.26
SHOX2O60902 ST3GAL3-208ENST00000361392 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
SHOX2O60902 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
SHOX2O60902 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
SHOX2O60902 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC16.69■□□□□ 0.26
SHOX2O60902 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
SHOX2O60902 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
SHOX2O60902 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
SHOX2O60902 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC16.69■□□□□ 0.26
SHOX2O60902 CCR12P-201ENST00000446203 998 ntBASIC16.69■□□□□ 0.26
SHOX2O60902 MDH2-205ENST00000461263 648 ntTSL 2 BASIC16.69■□□□□ 0.26
SHOX2O60902 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
SHOX2O60902 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
SHOX2O60902 NID2-208ENST00000617139 3827 ntTSL 5 BASIC16.69■□□□□ 0.26
SHOX2O60902 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
SHOX2O60902 ANKRD20A8P-203ENST00000641373 517 ntBASIC16.69■□□□□ 0.26
SHOX2O60902 LINC00839-202ENST00000429940 2253 ntTSL 2 BASIC16.69■□□□□ 0.26
SHOX2O60902 CLCN1-201ENST00000343257 3172 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
SHOX2O60902 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
SHOX2O60902 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
SHOX2O60902 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
SHOX2O60902 EIF3J-AS1-201ENST00000313807 2863 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
SHOX2O60902 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
SHOX2O60902 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
SHOX2O60902 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms