Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
FOXA2Q9Y261 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
FOXA2Q9Y261 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
FOXA2Q9Y261 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
FOXA2Q9Y261 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
FOXA2Q9Y261 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC13.53□□□□□ -0.24
FOXA2Q9Y261 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC13.53□□□□□ -0.24
FOXA2Q9Y261 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
FOXA2Q9Y261 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC13.53□□□□□ -0.24
FOXA2Q9Y261 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
FOXA2Q9Y261 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
FOXA2Q9Y261 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC13.53□□□□□ -0.24
FOXA2Q9Y261 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC13.53□□□□□ -0.24
FOXA2Q9Y261 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC13.53□□□□□ -0.24
FOXA2Q9Y261 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC13.53□□□□□ -0.24
FOXA2Q9Y261 KLK8-205ENST00000593490 267 ntTSL 3 BASIC13.53□□□□□ -0.24
FOXA2Q9Y261 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC13.53□□□□□ -0.24
FOXA2Q9Y261 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
FOXA2Q9Y261 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC13.53□□□□□ -0.24
FOXA2Q9Y261 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC13.53□□□□□ -0.24
FOXA2Q9Y261 MIR1199-201ENST00000621445 119 ntBASIC13.53□□□□□ -0.24
FOXA2Q9Y261 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
FOXA2Q9Y261 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
FOXA2Q9Y261 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
FOXA2Q9Y261 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC13.53□□□□□ -0.24
FOXA2Q9Y261 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
FOXA2Q9Y261 TOP3BP1-201ENST00000420768 1380 ntBASIC13.53□□□□□ -0.24
FOXA2Q9Y261 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC13.53□□□□□ -0.24
FOXA2Q9Y261 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC13.53□□□□□ -0.24
FOXA2Q9Y261 AC079328.2-201ENST00000561241 3354 ntBASIC13.53□□□□□ -0.24
FOXA2Q9Y261 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
FOXA2Q9Y261 AC046158.3-201ENST00000624947 2558 ntBASIC13.53□□□□□ -0.24
FOXA2Q9Y261 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC13.53□□□□□ -0.24
FOXA2Q9Y261 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
FOXA2Q9Y261 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC13.53□□□□□ -0.24
FOXA2Q9Y261 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
FOXA2Q9Y261 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC13.53□□□□□ -0.24
FOXA2Q9Y261 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
FOXA2Q9Y261 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC13.53□□□□□ -0.24
FOXA2Q9Y261 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC13.53□□□□□ -0.24
FOXA2Q9Y261 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
FOXA2Q9Y261 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC13.53□□□□□ -0.24
FOXA2Q9Y261 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.24
FOXA2Q9Y261 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC13.52□□□□□ -0.24
FOXA2Q9Y261 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.24
FOXA2Q9Y261 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
FOXA2Q9Y261 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
FOXA2Q9Y261 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
FOXA2Q9Y261 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.24
FOXA2Q9Y261 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.24
FOXA2Q9Y261 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC13.52□□□□□ -0.24
FOXA2Q9Y261 PCDHA1-201ENST00000378133 2726 ntBASIC13.52□□□□□ -0.24
FOXA2Q9Y261 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC13.52□□□□□ -0.24
FOXA2Q9Y261 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
FOXA2Q9Y261 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
FOXA2Q9Y261 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
FOXA2Q9Y261 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC13.52□□□□□ -0.25
FOXA2Q9Y261 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
FOXA2Q9Y261 ARTN-206ENST00000472435 402 ntTSL 3 BASIC13.52□□□□□ -0.25
FOXA2Q9Y261 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC13.52□□□□□ -0.25
FOXA2Q9Y261 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC13.52□□□□□ -0.25
FOXA2Q9Y261 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC13.52□□□□□ -0.25
FOXA2Q9Y261 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC13.52□□□□□ -0.25
FOXA2Q9Y261 AP001005.1-201ENST00000571755 1248 ntBASIC13.52□□□□□ -0.25
FOXA2Q9Y261 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC13.52□□□□□ -0.25
FOXA2Q9Y261 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC13.52□□□□□ -0.25
FOXA2Q9Y261 AC004706.3-202ENST00000621574 984 ntBASIC13.52□□□□□ -0.25
FOXA2Q9Y261 AC008735.5-201ENST00000623544 497 ntBASIC13.52□□□□□ -0.25
FOXA2Q9Y261 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC13.52□□□□□ -0.25
FOXA2Q9Y261 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC13.52□□□□□ -0.25
FOXA2Q9Y261 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.25
FOXA2Q9Y261 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC13.52□□□□□ -0.25
FOXA2Q9Y261 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC13.52□□□□□ -0.25
FOXA2Q9Y261 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
FOXA2Q9Y261 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC13.52□□□□□ -0.25
FOXA2Q9Y261 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC13.52□□□□□ -0.25
FOXA2Q9Y261 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
FOXA2Q9Y261 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
FOXA2Q9Y261 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
FOXA2Q9Y261 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
FOXA2Q9Y261 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC13.52□□□□□ -0.25
FOXA2Q9Y261 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
FOXA2Q9Y261 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
FOXA2Q9Y261 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
FOXA2Q9Y261 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC13.52□□□□□ -0.25
FOXA2Q9Y261 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
FOXA2Q9Y261 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC13.52□□□□□ -0.25
FOXA2Q9Y261 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC13.52□□□□□ -0.25
FOXA2Q9Y261 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
FOXA2Q9Y261 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC13.52□□□□□ -0.25
FOXA2Q9Y261 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC13.52□□□□□ -0.25
FOXA2Q9Y261 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC13.52□□□□□ -0.25
FOXA2Q9Y261 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC13.52□□□□□ -0.25
FOXA2Q9Y261 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
FOXA2Q9Y261 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
FOXA2Q9Y261 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
FOXA2Q9Y261 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
FOXA2Q9Y261 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC13.51□□□□□ -0.25
FOXA2Q9Y261 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
FOXA2Q9Y261 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 68.3 ms