Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
LIMCH1Q9UPQ0 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
LIMCH1Q9UPQ0 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC19.66■□□□□ 0.74
LIMCH1Q9UPQ0 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
LIMCH1Q9UPQ0 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC19.66■□□□□ 0.74
LIMCH1Q9UPQ0 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
LIMCH1Q9UPQ0 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC19.66■□□□□ 0.74
LIMCH1Q9UPQ0 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
LIMCH1Q9UPQ0 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
LIMCH1Q9UPQ0 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
LIMCH1Q9UPQ0 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC19.66■□□□□ 0.74
LIMCH1Q9UPQ0 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
LIMCH1Q9UPQ0 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
LIMCH1Q9UPQ0 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
LIMCH1Q9UPQ0 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC19.66■□□□□ 0.74
LIMCH1Q9UPQ0 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC19.66■□□□□ 0.74
LIMCH1Q9UPQ0 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC19.66■□□□□ 0.74
LIMCH1Q9UPQ0 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
LIMCH1Q9UPQ0 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC19.66■□□□□ 0.74
LIMCH1Q9UPQ0 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC19.66■□□□□ 0.74
LIMCH1Q9UPQ0 AC073648.2-201ENST00000510116 352 ntBASIC19.66■□□□□ 0.74
LIMCH1Q9UPQ0 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC19.66■□□□□ 0.74
LIMCH1Q9UPQ0 RIN3-211ENST00000557762 517 ntTSL 3 BASIC19.66■□□□□ 0.74
LIMCH1Q9UPQ0 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
LIMCH1Q9UPQ0 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
LIMCH1Q9UPQ0 AP001350.2-201ENST00000625104 1094 ntBASIC19.66■□□□□ 0.74
LIMCH1Q9UPQ0 PCGF3-213ENST00000620529 1899 ntBASIC19.66■□□□□ 0.74
LIMCH1Q9UPQ0 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC19.66■□□□□ 0.74
LIMCH1Q9UPQ0 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC19.66■□□□□ 0.74
LIMCH1Q9UPQ0 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC19.66■□□□□ 0.74
LIMCH1Q9UPQ0 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC19.66■□□□□ 0.74
LIMCH1Q9UPQ0 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
LIMCH1Q9UPQ0 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC19.66■□□□□ 0.74
LIMCH1Q9UPQ0 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC19.66■□□□□ 0.74
LIMCH1Q9UPQ0 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
LIMCH1Q9UPQ0 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
LIMCH1Q9UPQ0 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC19.65■□□□□ 0.74
LIMCH1Q9UPQ0 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC19.65■□□□□ 0.74
LIMCH1Q9UPQ0 LINC01144-201ENST00000626198 1710 ntBASIC19.65■□□□□ 0.74
LIMCH1Q9UPQ0 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC19.65■□□□□ 0.74
LIMCH1Q9UPQ0 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC19.65■□□□□ 0.74
LIMCH1Q9UPQ0 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
LIMCH1Q9UPQ0 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
LIMCH1Q9UPQ0 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
LIMCH1Q9UPQ0 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
LIMCH1Q9UPQ0 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC19.65■□□□□ 0.74
LIMCH1Q9UPQ0 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
LIMCH1Q9UPQ0 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
LIMCH1Q9UPQ0 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
LIMCH1Q9UPQ0 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC19.65■□□□□ 0.74
LIMCH1Q9UPQ0 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC19.65■□□□□ 0.74
LIMCH1Q9UPQ0 HCG4-201ENST00000418983 998 ntBASIC19.65■□□□□ 0.74
LIMCH1Q9UPQ0 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC19.65■□□□□ 0.74
LIMCH1Q9UPQ0 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC19.65■□□□□ 0.74
LIMCH1Q9UPQ0 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC19.65■□□□□ 0.74
LIMCH1Q9UPQ0 IGHV3-65-201ENST00000523210 341 ntBASIC19.65■□□□□ 0.74
LIMCH1Q9UPQ0 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC19.65■□□□□ 0.74
LIMCH1Q9UPQ0 CIPC-205ENST00000555437 566 ntTSL 3 BASIC19.65■□□□□ 0.74
LIMCH1Q9UPQ0 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC19.65■□□□□ 0.74
LIMCH1Q9UPQ0 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
LIMCH1Q9UPQ0 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
LIMCH1Q9UPQ0 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
LIMCH1Q9UPQ0 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
LIMCH1Q9UPQ0 AC008735.5-201ENST00000623544 497 ntBASIC19.65■□□□□ 0.74
LIMCH1Q9UPQ0 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
LIMCH1Q9UPQ0 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
LIMCH1Q9UPQ0 AC006449.6-201ENST00000612330 2296 ntBASIC19.65■□□□□ 0.74
LIMCH1Q9UPQ0 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC19.65■□□□□ 0.74
LIMCH1Q9UPQ0 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC19.65■□□□□ 0.74
LIMCH1Q9UPQ0 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
LIMCH1Q9UPQ0 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC19.64■□□□□ 0.74
LIMCH1Q9UPQ0 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.74
LIMCH1Q9UPQ0 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
LIMCH1Q9UPQ0 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.74
LIMCH1Q9UPQ0 AL162727.3-201ENST00000635661 2787 ntBASIC19.64■□□□□ 0.73
LIMCH1Q9UPQ0 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.73
LIMCH1Q9UPQ0 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
LIMCH1Q9UPQ0 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC19.64■□□□□ 0.73
LIMCH1Q9UPQ0 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC19.64■□□□□ 0.73
LIMCH1Q9UPQ0 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC19.64■□□□□ 0.73
LIMCH1Q9UPQ0 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
LIMCH1Q9UPQ0 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC19.64■□□□□ 0.73
LIMCH1Q9UPQ0 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC19.64■□□□□ 0.73
LIMCH1Q9UPQ0 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
LIMCH1Q9UPQ0 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC19.64■□□□□ 0.73
LIMCH1Q9UPQ0 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
LIMCH1Q9UPQ0 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC19.64■□□□□ 0.73
LIMCH1Q9UPQ0 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
LIMCH1Q9UPQ0 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC19.64■□□□□ 0.73
LIMCH1Q9UPQ0 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
LIMCH1Q9UPQ0 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
LIMCH1Q9UPQ0 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
LIMCH1Q9UPQ0 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
LIMCH1Q9UPQ0 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
LIMCH1Q9UPQ0 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
LIMCH1Q9UPQ0 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
LIMCH1Q9UPQ0 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC19.63■□□□□ 0.73
LIMCH1Q9UPQ0 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC19.63■□□□□ 0.73
LIMCH1Q9UPQ0 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC19.63■□□□□ 0.73
LIMCH1Q9UPQ0 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms