Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
LIMD1Q9UGP4 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC17.38■□□□□ 0.37
LIMD1Q9UGP4 LY6E-204ENST00000519546 971 ntTSL 2 BASIC17.38■□□□□ 0.37
LIMD1Q9UGP4 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
LIMD1Q9UGP4 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC17.38■□□□□ 0.37
LIMD1Q9UGP4 RARRES2P9-201ENST00000565168 469 ntBASIC17.38■□□□□ 0.37
LIMD1Q9UGP4 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
LIMD1Q9UGP4 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
LIMD1Q9UGP4 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC17.38■□□□□ 0.37
LIMD1Q9UGP4 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
LIMD1Q9UGP4 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
LIMD1Q9UGP4 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
LIMD1Q9UGP4 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LIMD1Q9UGP4 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LIMD1Q9UGP4 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
LIMD1Q9UGP4 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LIMD1Q9UGP4 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC17.38■□□□□ 0.37
LIMD1Q9UGP4 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC17.38■□□□□ 0.37
LIMD1Q9UGP4 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
LIMD1Q9UGP4 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LIMD1Q9UGP4 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
LIMD1Q9UGP4 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC17.37■□□□□ 0.37
LIMD1Q9UGP4 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
LIMD1Q9UGP4 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
LIMD1Q9UGP4 AP3S2-216ENST00000617003 1561 ntBASIC17.37■□□□□ 0.37
LIMD1Q9UGP4 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
LIMD1Q9UGP4 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
LIMD1Q9UGP4 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC17.37■□□□□ 0.37
LIMD1Q9UGP4 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
LIMD1Q9UGP4 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
LIMD1Q9UGP4 GPR53P-205ENST00000457298 1084 ntBASIC17.37■□□□□ 0.37
LIMD1Q9UGP4 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC17.37■□□□□ 0.37
LIMD1Q9UGP4 TP53TG3HP-202ENST00000569755 579 ntBASIC17.37■□□□□ 0.37
LIMD1Q9UGP4 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
LIMD1Q9UGP4 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC17.37■□□□□ 0.37
LIMD1Q9UGP4 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC17.37■□□□□ 0.37
LIMD1Q9UGP4 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
LIMD1Q9UGP4 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC17.37■□□□□ 0.37
LIMD1Q9UGP4 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC17.37■□□□□ 0.37
LIMD1Q9UGP4 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC17.37■□□□□ 0.37
LIMD1Q9UGP4 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
LIMD1Q9UGP4 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
LIMD1Q9UGP4 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC17.37■□□□□ 0.37
LIMD1Q9UGP4 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC17.37■□□□□ 0.37
LIMD1Q9UGP4 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
LIMD1Q9UGP4 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
LIMD1Q9UGP4 AC007541.1-201ENST00000570282 1469 ntBASIC17.37■□□□□ 0.37
LIMD1Q9UGP4 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
LIMD1Q9UGP4 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
LIMD1Q9UGP4 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
LIMD1Q9UGP4 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC17.36■□□□□ 0.37
LIMD1Q9UGP4 SLC22A20-204ENST00000530038 1673 ntBASIC17.36■□□□□ 0.37
LIMD1Q9UGP4 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
LIMD1Q9UGP4 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC17.36■□□□□ 0.37
LIMD1Q9UGP4 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
LIMD1Q9UGP4 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
LIMD1Q9UGP4 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
LIMD1Q9UGP4 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
LIMD1Q9UGP4 CEP83-AS1-201ENST00000623122 2482 ntBASIC17.36■□□□□ 0.37
LIMD1Q9UGP4 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
LIMD1Q9UGP4 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
LIMD1Q9UGP4 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
LIMD1Q9UGP4 GPR148-201ENST00000309926 1267 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
LIMD1Q9UGP4 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC17.36■□□□□ 0.37
LIMD1Q9UGP4 IFT20-216ENST00000588477 774 ntTSL 5 BASIC17.36■□□□□ 0.37
LIMD1Q9UGP4 MIR6799-201ENST00000620297 69 ntBASIC17.36■□□□□ 0.37
LIMD1Q9UGP4 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
LIMD1Q9UGP4 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
LIMD1Q9UGP4 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
LIMD1Q9UGP4 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
LIMD1Q9UGP4 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC17.36■□□□□ 0.37
LIMD1Q9UGP4 PRORSD1P-202ENST00000563365 2154 ntBASIC17.36■□□□□ 0.37
LIMD1Q9UGP4 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC17.36■□□□□ 0.37
LIMD1Q9UGP4 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC17.36■□□□□ 0.37
LIMD1Q9UGP4 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC17.36■□□□□ 0.37
LIMD1Q9UGP4 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
LIMD1Q9UGP4 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC17.35■□□□□ 0.37
LIMD1Q9UGP4 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC17.35■□□□□ 0.37
LIMD1Q9UGP4 LYSMD4-203ENST00000378904 2122 ntBASIC17.35■□□□□ 0.37
LIMD1Q9UGP4 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
LIMD1Q9UGP4 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC17.35■□□□□ 0.37
LIMD1Q9UGP4 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC17.35■□□□□ 0.37
LIMD1Q9UGP4 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
LIMD1Q9UGP4 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC17.35■□□□□ 0.37
LIMD1Q9UGP4 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
LIMD1Q9UGP4 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
LIMD1Q9UGP4 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC17.35■□□□□ 0.37
LIMD1Q9UGP4 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
LIMD1Q9UGP4 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC17.35■□□□□ 0.37
LIMD1Q9UGP4 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC17.35■□□□□ 0.37
LIMD1Q9UGP4 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC17.35■□□□□ 0.37
LIMD1Q9UGP4 SATB1-217ENST00000493952 626 ntTSL 3 BASIC17.35■□□□□ 0.37
LIMD1Q9UGP4 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC17.35■□□□□ 0.37
LIMD1Q9UGP4 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC17.35■□□□□ 0.37
LIMD1Q9UGP4 AC007967.4-201ENST00000614700 386 ntBASIC17.35■□□□□ 0.37
LIMD1Q9UGP4 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC17.35■□□□□ 0.37
LIMD1Q9UGP4 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
LIMD1Q9UGP4 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC17.35■□□□□ 0.37
LIMD1Q9UGP4 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
LIMD1Q9UGP4 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 43.5 ms