Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC19.39■□□□□ 0.69
CCDC39Q9UFE4 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC19.39■□□□□ 0.69
CCDC39Q9UFE4 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CCDC39Q9UFE4 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC19.38■□□□□ 0.69
CCDC39Q9UFE4 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
CCDC39Q9UFE4 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
CCDC39Q9UFE4 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CCDC39Q9UFE4 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CCDC39Q9UFE4 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CCDC39Q9UFE4 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CCDC39Q9UFE4 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
CCDC39Q9UFE4 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CCDC39Q9UFE4 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
CCDC39Q9UFE4 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CCDC39Q9UFE4 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
CCDC39Q9UFE4 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
CCDC39Q9UFE4 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
CCDC39Q9UFE4 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC19.38■□□□□ 0.69
CCDC39Q9UFE4 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC19.38■□□□□ 0.69
CCDC39Q9UFE4 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC19.38■□□□□ 0.69
CCDC39Q9UFE4 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC19.38■□□□□ 0.69
CCDC39Q9UFE4 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
CCDC39Q9UFE4 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC19.38■□□□□ 0.69
CCDC39Q9UFE4 METTL23-204ENST00000586752 904 ntTSL 2 BASIC19.38■□□□□ 0.69
CCDC39Q9UFE4 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC19.38■□□□□ 0.69
CCDC39Q9UFE4 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
CCDC39Q9UFE4 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CCDC39Q9UFE4 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC19.38■□□□□ 0.69
CCDC39Q9UFE4 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
CCDC39Q9UFE4 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CCDC39Q9UFE4 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC39Q9UFE4 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC39Q9UFE4 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC39Q9UFE4 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC19.37■□□□□ 0.69
CCDC39Q9UFE4 VILL-207ENST00000465644 1857 ntTSL 5 BASIC19.37■□□□□ 0.69
CCDC39Q9UFE4 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC19.37■□□□□ 0.69
CCDC39Q9UFE4 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC39Q9UFE4 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC19.37■□□□□ 0.69
CCDC39Q9UFE4 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC19.37■□□□□ 0.69
CCDC39Q9UFE4 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC39Q9UFE4 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC39Q9UFE4 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC39Q9UFE4 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC39Q9UFE4 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC39Q9UFE4 LSM5-204ENST00000409909 740 ntTSL 2 BASIC19.37■□□□□ 0.69
CCDC39Q9UFE4 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC19.37■□□□□ 0.69
CCDC39Q9UFE4 PRYP5-201ENST00000451909 266 ntBASIC19.37■□□□□ 0.69
CCDC39Q9UFE4 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
CCDC39Q9UFE4 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC39Q9UFE4 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC19.37■□□□□ 0.69
CCDC39Q9UFE4 LINC01711-201ENST00000598340 967 ntBASIC19.37■□□□□ 0.69
CCDC39Q9UFE4 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC39Q9UFE4 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC39Q9UFE4 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
CCDC39Q9UFE4 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC39Q9UFE4 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC19.37■□□□□ 0.69
CCDC39Q9UFE4 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC39Q9UFE4 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC19.37■□□□□ 0.69
CCDC39Q9UFE4 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
CCDC39Q9UFE4 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC19.37■□□□□ 0.69
CCDC39Q9UFE4 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC39Q9UFE4 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC39Q9UFE4 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CCDC39Q9UFE4 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC19.37■□□□□ 0.69
CCDC39Q9UFE4 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
CCDC39Q9UFE4 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CCDC39Q9UFE4 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC19.36■□□□□ 0.69
CCDC39Q9UFE4 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC19.36■□□□□ 0.69
CCDC39Q9UFE4 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
CCDC39Q9UFE4 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC19.36■□□□□ 0.69
CCDC39Q9UFE4 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
CCDC39Q9UFE4 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CCDC39Q9UFE4 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CCDC39Q9UFE4 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
CCDC39Q9UFE4 AC144831.1-201ENST00000573312 2656 ntBASIC19.36■□□□□ 0.69
CCDC39Q9UFE4 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC19.36■□□□□ 0.69
CCDC39Q9UFE4 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
CCDC39Q9UFE4 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC19.36■□□□□ 0.69
CCDC39Q9UFE4 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC19.36■□□□□ 0.69
CCDC39Q9UFE4 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC19.36■□□□□ 0.69
CCDC39Q9UFE4 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC19.36■□□□□ 0.69
CCDC39Q9UFE4 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CCDC39Q9UFE4 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
CCDC39Q9UFE4 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CCDC39Q9UFE4 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
CCDC39Q9UFE4 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
CCDC39Q9UFE4 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
CCDC39Q9UFE4 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
CCDC39Q9UFE4 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
CCDC39Q9UFE4 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
CCDC39Q9UFE4 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC19.36■□□□□ 0.69
CCDC39Q9UFE4 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CCDC39Q9UFE4 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC19.36■□□□□ 0.69
CCDC39Q9UFE4 BX005266.1-201ENST00000473402 457 ntBASIC19.36■□□□□ 0.69
CCDC39Q9UFE4 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC19.36■□□□□ 0.69
CCDC39Q9UFE4 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC19.36■□□□□ 0.69
CCDC39Q9UFE4 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC19.36■□□□□ 0.69
CCDC39Q9UFE4 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC19.36■□□□□ 0.69
CCDC39Q9UFE4 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC19.36■□□□□ 0.69
CCDC39Q9UFE4 CYB561-217ENST00000582997 877 ntTSL 5 BASIC19.36■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 51.6 ms