Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.33
TDP1Q9NUW8 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC17.08■□□□□ 0.33
TDP1Q9NUW8 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC17.08■□□□□ 0.33
TDP1Q9NUW8 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.33
TDP1Q9NUW8 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
TDP1Q9NUW8 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
TDP1Q9NUW8 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
TDP1Q9NUW8 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
TDP1Q9NUW8 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC17.08■□□□□ 0.32
TDP1Q9NUW8 TSSK5P-201ENST00000423978 907 ntBASIC17.08■□□□□ 0.32
TDP1Q9NUW8 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC17.08■□□□□ 0.32
TDP1Q9NUW8 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC17.08■□□□□ 0.32
TDP1Q9NUW8 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC17.08■□□□□ 0.32
TDP1Q9NUW8 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC17.08■□□□□ 0.32
TDP1Q9NUW8 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC17.08■□□□□ 0.32
TDP1Q9NUW8 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC17.08■□□□□ 0.32
TDP1Q9NUW8 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
TDP1Q9NUW8 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC17.08■□□□□ 0.32
TDP1Q9NUW8 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
TDP1Q9NUW8 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.32
TDP1Q9NUW8 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC17.08■□□□□ 0.32
TDP1Q9NUW8 PCDHB18P-201ENST00000524813 2368 ntBASIC17.08■□□□□ 0.32
TDP1Q9NUW8 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
TDP1Q9NUW8 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
TDP1Q9NUW8 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
TDP1Q9NUW8 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC17.07■□□□□ 0.32
TDP1Q9NUW8 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC17.07■□□□□ 0.32
TDP1Q9NUW8 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC17.07■□□□□ 0.32
TDP1Q9NUW8 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
TDP1Q9NUW8 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC17.07■□□□□ 0.32
TDP1Q9NUW8 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
TDP1Q9NUW8 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
TDP1Q9NUW8 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC17.07■□□□□ 0.32
TDP1Q9NUW8 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
TDP1Q9NUW8 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
TDP1Q9NUW8 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC17.07■□□□□ 0.32
TDP1Q9NUW8 HNRNPA3P1-201ENST00000401429 1139 ntBASIC17.07■□□□□ 0.32
TDP1Q9NUW8 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
TDP1Q9NUW8 MRPS18AP1-201ENST00000414458 589 ntBASIC17.07■□□□□ 0.32
TDP1Q9NUW8 HNRNPA3P5-201ENST00000455201 833 ntBASIC17.07■□□□□ 0.32
TDP1Q9NUW8 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC17.07■□□□□ 0.32
TDP1Q9NUW8 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
TDP1Q9NUW8 RNA5SP410-201ENST00000516285 106 ntBASIC17.07■□□□□ 0.32
TDP1Q9NUW8 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC17.07■□□□□ 0.32
TDP1Q9NUW8 MAX-210ENST00000555419 765 ntTSL 5 BASIC17.07■□□□□ 0.32
TDP1Q9NUW8 LITAF-210ENST00000571976 548 ntTSL 2 BASIC17.07■□□□□ 0.32
TDP1Q9NUW8 LITAF-214ENST00000574703 486 ntTSL 2 BASIC17.07■□□□□ 0.32
TDP1Q9NUW8 FHL2-212ENST00000607522 759 ntTSL 2 BASIC17.07■□□□□ 0.32
TDP1Q9NUW8 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
TDP1Q9NUW8 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
TDP1Q9NUW8 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
TDP1Q9NUW8 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
TDP1Q9NUW8 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
TDP1Q9NUW8 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
TDP1Q9NUW8 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC17.07■□□□□ 0.32
TDP1Q9NUW8 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
TDP1Q9NUW8 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
TDP1Q9NUW8 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC17.07■□□□□ 0.32
TDP1Q9NUW8 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
TDP1Q9NUW8 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC17.07■□□□□ 0.32
TDP1Q9NUW8 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
TDP1Q9NUW8 AC022144.1-201ENST00000602255 1580 ntBASIC17.06■□□□□ 0.32
TDP1Q9NUW8 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
TDP1Q9NUW8 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
TDP1Q9NUW8 AL645728.1-201ENST00000366221 2101 ntBASIC17.06■□□□□ 0.32
TDP1Q9NUW8 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
TDP1Q9NUW8 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC17.06■□□□□ 0.32
TDP1Q9NUW8 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
TDP1Q9NUW8 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
TDP1Q9NUW8 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
TDP1Q9NUW8 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TDP1Q9NUW8 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC17.06■□□□□ 0.32
TDP1Q9NUW8 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
TDP1Q9NUW8 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TDP1Q9NUW8 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TDP1Q9NUW8 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TDP1Q9NUW8 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TDP1Q9NUW8 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC17.06■□□□□ 0.32
TDP1Q9NUW8 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC17.06■□□□□ 0.32
TDP1Q9NUW8 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
TDP1Q9NUW8 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TDP1Q9NUW8 VMO1-203ENST00000416307 712 ntTSL 2 BASIC17.06■□□□□ 0.32
TDP1Q9NUW8 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC17.06■□□□□ 0.32
TDP1Q9NUW8 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC17.06■□□□□ 0.32
TDP1Q9NUW8 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
TDP1Q9NUW8 MPI-209ENST00000564003 1195 ntTSL 2 BASIC17.06■□□□□ 0.32
TDP1Q9NUW8 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TDP1Q9NUW8 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC17.06■□□□□ 0.32
TDP1Q9NUW8 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC17.06■□□□□ 0.32
TDP1Q9NUW8 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
TDP1Q9NUW8 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TDP1Q9NUW8 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC17.06■□□□□ 0.32
TDP1Q9NUW8 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
TDP1Q9NUW8 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TDP1Q9NUW8 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC17.06■□□□□ 0.32
TDP1Q9NUW8 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC17.06■□□□□ 0.32
TDP1Q9NUW8 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TDP1Q9NUW8 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
TDP1Q9NUW8 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TDP1Q9NUW8 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms