Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
SIX2Q9NPC8 AC008741.2-201ENST00000612792 3115 ntBASIC17.86■□□□□ 0.45
SIX2Q9NPC8 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC17.86■□□□□ 0.45
SIX2Q9NPC8 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
SIX2Q9NPC8 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SIX2Q9NPC8 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC17.86■□□□□ 0.45
SIX2Q9NPC8 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC17.86■□□□□ 0.45
SIX2Q9NPC8 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC17.86■□□□□ 0.45
SIX2Q9NPC8 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC17.86■□□□□ 0.45
SIX2Q9NPC8 AC024909.3-201ENST00000611513 2257 ntBASIC17.86■□□□□ 0.45
SIX2Q9NPC8 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
SIX2Q9NPC8 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC17.85■□□□□ 0.45
SIX2Q9NPC8 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SIX2Q9NPC8 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SIX2Q9NPC8 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SIX2Q9NPC8 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
SIX2Q9NPC8 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC17.85■□□□□ 0.45
SIX2Q9NPC8 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
SIX2Q9NPC8 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC17.85■□□□□ 0.45
SIX2Q9NPC8 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC17.85■□□□□ 0.45
SIX2Q9NPC8 DPM2-202ENST00000373110 738 ntTSL 2 BASIC17.85■□□□□ 0.45
SIX2Q9NPC8 METTL26-205ENST00000397666 726 ntTSL 2 BASIC17.85■□□□□ 0.45
SIX2Q9NPC8 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
SIX2Q9NPC8 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
SIX2Q9NPC8 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC17.85■□□□□ 0.45
SIX2Q9NPC8 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC17.85■□□□□ 0.45
SIX2Q9NPC8 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC17.85■□□□□ 0.45
SIX2Q9NPC8 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
SIX2Q9NPC8 AC093909.1-201ENST00000504731 1122 ntBASIC17.85■□□□□ 0.45
SIX2Q9NPC8 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
SIX2Q9NPC8 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC17.85■□□□□ 0.45
SIX2Q9NPC8 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
SIX2Q9NPC8 AC096734.2-201ENST00000562054 433 ntBASIC17.85■□□□□ 0.45
SIX2Q9NPC8 AC034105.1-201ENST00000563488 319 ntBASIC17.85■□□□□ 0.45
SIX2Q9NPC8 AL603832.2-201ENST00000566195 2125 ntBASIC17.85■□□□□ 0.45
SIX2Q9NPC8 MIR3909-201ENST00000579518 119 ntBASIC17.85■□□□□ 0.45
SIX2Q9NPC8 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
SIX2Q9NPC8 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC17.85■□□□□ 0.45
SIX2Q9NPC8 Z83851.2-201ENST00000609564 659 ntBASIC17.85■□□□□ 0.45
SIX2Q9NPC8 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC17.85■□□□□ 0.45
SIX2Q9NPC8 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC17.85■□□□□ 0.45
SIX2Q9NPC8 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
SIX2Q9NPC8 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
SIX2Q9NPC8 AL645728.2-201ENST00000641974 660 ntBASIC17.85■□□□□ 0.45
SIX2Q9NPC8 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SIX2Q9NPC8 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SIX2Q9NPC8 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
SIX2Q9NPC8 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SIX2Q9NPC8 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
SIX2Q9NPC8 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SIX2Q9NPC8 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SIX2Q9NPC8 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
SIX2Q9NPC8 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
SIX2Q9NPC8 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC17.84■□□□□ 0.45
SIX2Q9NPC8 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SIX2Q9NPC8 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SIX2Q9NPC8 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC17.84■□□□□ 0.45
SIX2Q9NPC8 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SIX2Q9NPC8 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
SIX2Q9NPC8 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC17.84■□□□□ 0.45
SIX2Q9NPC8 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
SIX2Q9NPC8 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC17.84■□□□□ 0.45
SIX2Q9NPC8 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SIX2Q9NPC8 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
SIX2Q9NPC8 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC17.84■□□□□ 0.45
SIX2Q9NPC8 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SIX2Q9NPC8 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
SIX2Q9NPC8 CD99-202ENST00000381180 530 ntTSL 2 BASIC17.84■□□□□ 0.45
SIX2Q9NPC8 TPM4P1-201ENST00000436100 807 ntBASIC17.84■□□□□ 0.45
SIX2Q9NPC8 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC17.84■□□□□ 0.45
SIX2Q9NPC8 PENK-208ENST00000523051 772 ntTSL 5 BASIC17.84■□□□□ 0.45
SIX2Q9NPC8 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC17.84■□□□□ 0.45
SIX2Q9NPC8 AC145285.3-201ENST00000564603 959 ntBASIC17.84■□□□□ 0.45
SIX2Q9NPC8 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
SIX2Q9NPC8 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC17.84■□□□□ 0.45
SIX2Q9NPC8 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC17.84■□□□□ 0.45
SIX2Q9NPC8 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
SIX2Q9NPC8 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC17.84■□□□□ 0.45
SIX2Q9NPC8 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
SIX2Q9NPC8 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
SIX2Q9NPC8 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC17.84■□□□□ 0.45
SIX2Q9NPC8 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC17.84■□□□□ 0.45
SIX2Q9NPC8 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC17.84■□□□□ 0.45
SIX2Q9NPC8 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC17.84■□□□□ 0.45
SIX2Q9NPC8 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
SIX2Q9NPC8 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
SIX2Q9NPC8 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC17.84■□□□□ 0.45
SIX2Q9NPC8 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SIX2Q9NPC8 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SIX2Q9NPC8 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
SIX2Q9NPC8 SP100-205ENST00000409824 1802 ntTSL 5 BASIC17.84■□□□□ 0.45
SIX2Q9NPC8 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SIX2Q9NPC8 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
SIX2Q9NPC8 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC17.84■□□□□ 0.45
SIX2Q9NPC8 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC17.83■□□□□ 0.45
SIX2Q9NPC8 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
SIX2Q9NPC8 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.45
SIX2Q9NPC8 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
SIX2Q9NPC8 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC17.83■□□□□ 0.45
SIX2Q9NPC8 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 43.6 ms