Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC14.81□□□□□ -0.04
MMP28Q9H239 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
MMP28Q9H239 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC14.81□□□□□ -0.04
MMP28Q9H239 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC14.81□□□□□ -0.04
MMP28Q9H239 PAPOLA-223ENST00000557320 3264 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
MMP28Q9H239 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC14.81□□□□□ -0.04
MMP28Q9H239 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
MMP28Q9H239 TRIM45-201ENST00000256649 3515 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
MMP28Q9H239 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC14.81□□□□□ -0.04
MMP28Q9H239 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC14.81□□□□□ -0.04
MMP28Q9H239 AC126755.1-201ENST00000525846 6405 ntBASIC14.81□□□□□ -0.04
MMP28Q9H239 MED29-202ENST00000594368 1471 ntTSL 2 BASIC14.81□□□□□ -0.04
MMP28Q9H239 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
MMP28Q9H239 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC14.81□□□□□ -0.04
MMP28Q9H239 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC14.81□□□□□ -0.04
MMP28Q9H239 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC14.81□□□□□ -0.04
MMP28Q9H239 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
MMP28Q9H239 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
MMP28Q9H239 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC14.81□□□□□ -0.04
MMP28Q9H239 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
MMP28Q9H239 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
MMP28Q9H239 ACE-204ENST00000428043 5120 ntTSL 2 BASIC14.8□□□□□ -0.04
MMP28Q9H239 PATZ1-204ENST00000405309 3711 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
MMP28Q9H239 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
MMP28Q9H239 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
MMP28Q9H239 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
MMP28Q9H239 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC14.8□□□□□ -0.04
MMP28Q9H239 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
MMP28Q9H239 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
MMP28Q9H239 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
MMP28Q9H239 PRMT9-201ENST00000322396 3528 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
MMP28Q9H239 SPON1-201ENST00000576479 4837 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
MMP28Q9H239 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
MMP28Q9H239 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
MMP28Q9H239 HBZP1-201ENST00000354915 429 ntBASIC14.8□□□□□ -0.04
MMP28Q9H239 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC14.8□□□□□ -0.04
MMP28Q9H239 KRT18P48-201ENST00000434763 852 ntBASIC14.8□□□□□ -0.04
MMP28Q9H239 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC14.8□□□□□ -0.04
MMP28Q9H239 AC113404.2-201ENST00000507884 177 ntBASIC14.8□□□□□ -0.04
MMP28Q9H239 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC14.8□□□□□ -0.04
MMP28Q9H239 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC14.8□□□□□ -0.04
MMP28Q9H239 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC14.8□□□□□ -0.04
MMP28Q9H239 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC14.8□□□□□ -0.04
MMP28Q9H239 DBP-204ENST00000599385 709 ntTSL 3 BASIC14.8□□□□□ -0.04
MMP28Q9H239 SPEG-225ENST00000617028 815 ntTSL 5 BASIC14.8□□□□□ -0.04
MMP28Q9H239 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC14.8□□□□□ -0.04
MMP28Q9H239 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC14.8□□□□□ -0.04
MMP28Q9H239 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC14.8□□□□□ -0.04
MMP28Q9H239 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC14.8□□□□□ -0.04
MMP28Q9H239 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
MMP28Q9H239 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
MMP28Q9H239 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
MMP28Q9H239 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC14.8□□□□□ -0.04
MMP28Q9H239 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC14.8□□□□□ -0.04
MMP28Q9H239 AC006538.1-201ENST00000567905 1585 ntBASIC14.8□□□□□ -0.04
MMP28Q9H239 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
MMP28Q9H239 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC14.8□□□□□ -0.04
MMP28Q9H239 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC14.8□□□□□ -0.04
MMP28Q9H239 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
MMP28Q9H239 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
MMP28Q9H239 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
MMP28Q9H239 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
MMP28Q9H239 ITPK1-201ENST00000267615 6066 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
MMP28Q9H239 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
MMP28Q9H239 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
MMP28Q9H239 RASGRF2-206ENST00000638442 2842 ntTSL 5 BASIC14.79□□□□□ -0.04
MMP28Q9H239 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
MMP28Q9H239 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC14.79□□□□□ -0.04
MMP28Q9H239 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
MMP28Q9H239 GPD1L-201ENST00000282541 4060 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
MMP28Q9H239 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
MMP28Q9H239 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
MMP28Q9H239 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
MMP28Q9H239 APAF1-203ENST00000359972 7029 ntAPPRIS ALT1 TSL 1 (best) BASIC14.79□□□□□ -0.04
MMP28Q9H239 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
MMP28Q9H239 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC14.79□□□□□ -0.04
MMP28Q9H239 CYB561-203ENST00000392976 3151 ntAPPRIS P1 TSL 3 BASIC14.79□□□□□ -0.04
MMP28Q9H239 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
MMP28Q9H239 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC14.79□□□□□ -0.04
MMP28Q9H239 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
MMP28Q9H239 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
MMP28Q9H239 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC14.79□□□□□ -0.04
MMP28Q9H239 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC14.79□□□□□ -0.04
MMP28Q9H239 AL391256.1-201ENST00000443260 1855 ntBASIC14.79□□□□□ -0.04
MMP28Q9H239 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC14.79□□□□□ -0.04
MMP28Q9H239 AL671277.2-201ENST00000458060 996 ntBASIC14.79□□□□□ -0.04
MMP28Q9H239 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC14.79□□□□□ -0.04
MMP28Q9H239 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
MMP28Q9H239 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC14.79□□□□□ -0.04
MMP28Q9H239 LINC00167-201ENST00000530583 1419 ntBASIC14.79□□□□□ -0.04
MMP28Q9H239 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC14.79□□□□□ -0.04
MMP28Q9H239 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
MMP28Q9H239 AC124947.2-201ENST00000547118 1133 ntBASIC14.79□□□□□ -0.04
MMP28Q9H239 ZNF444P1-201ENST00000559497 298 ntBASIC14.79□□□□□ -0.04
MMP28Q9H239 TEN1-204ENST00000588202 862 ntTSL 3 BASIC14.79□□□□□ -0.04
MMP28Q9H239 TK1-205ENST00000590862 642 ntTSL 3 BASIC14.79□□□□□ -0.04
MMP28Q9H239 AL139327.4-201ENST00000612362 153 ntBASIC14.79□□□□□ -0.04
MMP28Q9H239 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC14.79□□□□□ -0.04
MMP28Q9H239 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC14.79□□□□□ -0.04
MMP28Q9H239 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 145.7 ms