Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC18.26■□□□□ 0.51
TRAIPQ9BWF2 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC18.26■□□□□ 0.51
TRAIPQ9BWF2 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
TRAIPQ9BWF2 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC18.26■□□□□ 0.51
TRAIPQ9BWF2 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC18.26■□□□□ 0.51
TRAIPQ9BWF2 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
TRAIPQ9BWF2 LINC02084-201ENST00000606069 1096 ntBASIC18.26■□□□□ 0.51
TRAIPQ9BWF2 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC18.26■□□□□ 0.51
TRAIPQ9BWF2 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
TRAIPQ9BWF2 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
TRAIPQ9BWF2 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
TRAIPQ9BWF2 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
TRAIPQ9BWF2 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
TRAIPQ9BWF2 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
TRAIPQ9BWF2 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
TRAIPQ9BWF2 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC18.26■□□□□ 0.51
TRAIPQ9BWF2 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC18.26■□□□□ 0.51
TRAIPQ9BWF2 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC18.26■□□□□ 0.51
TRAIPQ9BWF2 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC18.26■□□□□ 0.51
TRAIPQ9BWF2 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
TRAIPQ9BWF2 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
TRAIPQ9BWF2 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
TRAIPQ9BWF2 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
TRAIPQ9BWF2 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
TRAIPQ9BWF2 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
TRAIPQ9BWF2 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
TRAIPQ9BWF2 STX3-203ENST00000529177 1571 ntTSL 2 BASIC18.25■□□□□ 0.51
TRAIPQ9BWF2 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
TRAIPQ9BWF2 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
TRAIPQ9BWF2 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
TRAIPQ9BWF2 HARS-204ENST00000438307 1789 ntTSL 2 BASIC18.25■□□□□ 0.51
TRAIPQ9BWF2 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC18.25■□□□□ 0.51
TRAIPQ9BWF2 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
TRAIPQ9BWF2 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
TRAIPQ9BWF2 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
TRAIPQ9BWF2 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
TRAIPQ9BWF2 MIR346-201ENST00000362234 95 ntBASIC18.25■□□□□ 0.51
TRAIPQ9BWF2 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
TRAIPQ9BWF2 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
TRAIPQ9BWF2 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC18.25■□□□□ 0.51
TRAIPQ9BWF2 ATP5L2-201ENST00000505920 799 ntAPPRIS P1 BASIC18.25■□□□□ 0.51
TRAIPQ9BWF2 SPCS2P1-201ENST00000561636 679 ntBASIC18.25■□□□□ 0.51
TRAIPQ9BWF2 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC18.25■□□□□ 0.51
TRAIPQ9BWF2 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
TRAIPQ9BWF2 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC18.25■□□□□ 0.51
TRAIPQ9BWF2 AC093512.1-201ENST00000617969 520 ntBASIC18.25■□□□□ 0.51
TRAIPQ9BWF2 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC18.25■□□□□ 0.51
TRAIPQ9BWF2 AC008267.7-201ENST00000624570 1194 ntBASIC18.25■□□□□ 0.51
TRAIPQ9BWF2 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
TRAIPQ9BWF2 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
TRAIPQ9BWF2 LINC02012-201ENST00000608206 1725 ntBASIC18.25■□□□□ 0.51
TRAIPQ9BWF2 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
TRAIPQ9BWF2 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
TRAIPQ9BWF2 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
TRAIPQ9BWF2 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
TRAIPQ9BWF2 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
TRAIPQ9BWF2 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC18.25■□□□□ 0.51
TRAIPQ9BWF2 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
TRAIPQ9BWF2 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
TRAIPQ9BWF2 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
TRAIPQ9BWF2 BSG-215ENST00000618006 1329 ntTSL 2 BASIC18.24■□□□□ 0.51
TRAIPQ9BWF2 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
TRAIPQ9BWF2 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC18.24■□□□□ 0.51
TRAIPQ9BWF2 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
TRAIPQ9BWF2 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
TRAIPQ9BWF2 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
TRAIPQ9BWF2 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
TRAIPQ9BWF2 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
TRAIPQ9BWF2 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
TRAIPQ9BWF2 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
TRAIPQ9BWF2 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC18.24■□□□□ 0.51
TRAIPQ9BWF2 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC18.24■□□□□ 0.51
TRAIPQ9BWF2 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC18.24■□□□□ 0.51
TRAIPQ9BWF2 FAM86GP-201ENST00000448322 971 ntBASIC18.24■□□□□ 0.51
TRAIPQ9BWF2 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC18.24■□□□□ 0.51
TRAIPQ9BWF2 AC069262.1-201ENST00000539058 672 ntBASIC18.24■□□□□ 0.51
TRAIPQ9BWF2 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
TRAIPQ9BWF2 AC051619.7-201ENST00000568314 623 ntBASIC18.24■□□□□ 0.51
TRAIPQ9BWF2 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
TRAIPQ9BWF2 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC18.24■□□□□ 0.51
TRAIPQ9BWF2 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC18.24■□□□□ 0.51
TRAIPQ9BWF2 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC18.24■□□□□ 0.51
TRAIPQ9BWF2 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
TRAIPQ9BWF2 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC18.24■□□□□ 0.51
TRAIPQ9BWF2 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC18.24■□□□□ 0.51
TRAIPQ9BWF2 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
TRAIPQ9BWF2 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC18.24■□□□□ 0.51
TRAIPQ9BWF2 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC18.24■□□□□ 0.51
TRAIPQ9BWF2 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
TRAIPQ9BWF2 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
TRAIPQ9BWF2 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC18.24■□□□□ 0.51
TRAIPQ9BWF2 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
TRAIPQ9BWF2 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
TRAIPQ9BWF2 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
TRAIPQ9BWF2 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
TRAIPQ9BWF2 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC18.23■□□□□ 0.51
TRAIPQ9BWF2 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC18.23■□□□□ 0.51
TRAIPQ9BWF2 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
TRAIPQ9BWF2 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
TRAIPQ9BWF2 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms