Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 GEMIN7-204ENST00000591747 576 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
CDX2Q99626 BRI3BPP1-201ENST00000594224 787 ntBASIC17.16■□□□□ 0.34
CDX2Q99626 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC17.16■□□□□ 0.34
CDX2Q99626 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC17.16■□□□□ 0.34
CDX2Q99626 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
CDX2Q99626 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC17.16■□□□□ 0.34
CDX2Q99626 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC17.16■□□□□ 0.34
CDX2Q99626 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
CDX2Q99626 CHST10-203ENST00000409701 1338 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CDX2Q99626 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CDX2Q99626 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CDX2Q99626 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC17.16■□□□□ 0.34
CDX2Q99626 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
CDX2Q99626 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC17.16■□□□□ 0.34
CDX2Q99626 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CDX2Q99626 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CDX2Q99626 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC17.15■□□□□ 0.34
CDX2Q99626 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC17.15■□□□□ 0.34
CDX2Q99626 HEBP1-201ENST00000014930 1173 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CDX2Q99626 TREM2-203ENST00000373122 1012 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
CDX2Q99626 FGF13-204ENST00000436198 1165 ntTSL 2 BASIC17.15■□□□□ 0.34
CDX2Q99626 AL139010.1-201ENST00000454878 894 ntBASIC17.15■□□□□ 0.34
CDX2Q99626 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC17.15■□□□□ 0.34
CDX2Q99626 UCHL1-207ENST00000508768 827 ntTSL 3 BASIC17.15■□□□□ 0.34
CDX2Q99626 TPO-215ENST00000539820 1157 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CDX2Q99626 AP006547.1-201ENST00000563435 692 ntBASIC17.15■□□□□ 0.34
CDX2Q99626 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
CDX2Q99626 MFSD11-218ENST00000591864 446 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CDX2Q99626 PRCD-210ENST00000592014 462 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CDX2Q99626 AL049840.4-201ENST00000602422 811 ntBASIC17.15■□□□□ 0.34
CDX2Q99626 SIRT2-219ENST00000613542 1170 ntTSL 5 BASIC17.15■□□□□ 0.34
CDX2Q99626 AC005695.3-201ENST00000614522 232 ntBASIC17.15■□□□□ 0.34
CDX2Q99626 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CDX2Q99626 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
CDX2Q99626 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC17.15■□□□□ 0.34
CDX2Q99626 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CDX2Q99626 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CDX2Q99626 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CDX2Q99626 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CDX2Q99626 AC134312.5-201ENST00000568031 1313 ntBASIC17.15■□□□□ 0.34
CDX2Q99626 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CDX2Q99626 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CDX2Q99626 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CDX2Q99626 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC17.14■□□□□ 0.34
CDX2Q99626 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CDX2Q99626 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
CDX2Q99626 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC17.14■□□□□ 0.33
CDX2Q99626 CPA5-201ENST00000393213 1444 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CDX2Q99626 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CDX2Q99626 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CDX2Q99626 VSIG2-201ENST00000326621 1148 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CDX2Q99626 MPV17-204ENST00000399052 749 ntTSL 4 BASIC17.14■□□□□ 0.33
CDX2Q99626 CD8A-204ENST00000409781 597 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
CDX2Q99626 EVA1A-204ENST00000410071 777 ntAPPRIS P2 TSL 3 BASIC17.14■□□□□ 0.33
CDX2Q99626 SNHG17-201ENST00000413755 648 ntTSL 3 BASIC17.14■□□□□ 0.33
CDX2Q99626 AC004471.1-201ENST00000456035 582 ntTSL 4 BASIC17.14■□□□□ 0.33
CDX2Q99626 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC17.14■□□□□ 0.33
CDX2Q99626 TSACC-208ENST00000481479 741 ntTSL 2 BASIC17.14■□□□□ 0.33
CDX2Q99626 AC106760.1-201ENST00000508690 800 ntBASIC17.14■□□□□ 0.33
CDX2Q99626 AC009486.1-201ENST00000569860 813 ntBASIC17.14■□□□□ 0.33
CDX2Q99626 LINC00479-204ENST00000589300 718 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CDX2Q99626 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC17.14■□□□□ 0.33
CDX2Q99626 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC17.14■□□□□ 0.33
CDX2Q99626 AL158212.4-201ENST00000624062 1286 ntBASIC17.14■□□□□ 0.33
CDX2Q99626 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.33
CDX2Q99626 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC17.14■□□□□ 0.33
CDX2Q99626 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CDX2Q99626 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
CDX2Q99626 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CDX2Q99626 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC17.14■□□□□ 0.33
CDX2Q99626 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC17.14■□□□□ 0.33
CDX2Q99626 AC116562.4-201ENST00000641316 2276 ntBASIC17.14■□□□□ 0.33
CDX2Q99626 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CDX2Q99626 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC17.14■□□□□ 0.33
CDX2Q99626 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CDX2Q99626 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CDX2Q99626 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CDX2Q99626 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CDX2Q99626 ZNF815P-201ENST00000421890 1352 ntTSL 2 BASIC17.14■□□□□ 0.33
CDX2Q99626 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
CDX2Q99626 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CDX2Q99626 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CDX2Q99626 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CDX2Q99626 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
CDX2Q99626 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
CDX2Q99626 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC17.13■□□□□ 0.33
CDX2Q99626 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC17.13■□□□□ 0.33
CDX2Q99626 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
CDX2Q99626 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CDX2Q99626 NDUFB8-201ENST00000299166 671 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CDX2Q99626 SDHAF4-201ENST00000370474 1196 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CDX2Q99626 TSPO-203ENST00000396265 1075 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
CDX2Q99626 HLA-DQB2-229ENST00000411527 1059 ntBASIC17.13■□□□□ 0.33
CDX2Q99626 LINC01694-201ENST00000424569 821 ntTSL 5 BASIC17.13■□□□□ 0.33
CDX2Q99626 GDAP1-202ENST00000434412 1228 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CDX2Q99626 AC012441.1-201ENST00000446669 685 ntBASIC17.13■□□□□ 0.33
CDX2Q99626 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC17.13■□□□□ 0.33
CDX2Q99626 MIR4750-201ENST00000584564 56 ntBASIC17.13■□□□□ 0.33
CDX2Q99626 AC097724.1-201ENST00000609581 426 ntBASIC17.13■□□□□ 0.33
CDX2Q99626 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 71.3 ms