Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC16.28■□□□□ 0.2
VRK3Q8IV63 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC16.28■□□□□ 0.2
VRK3Q8IV63 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC16.28■□□□□ 0.2
VRK3Q8IV63 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
VRK3Q8IV63 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
VRK3Q8IV63 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
VRK3Q8IV63 PMP22-202ENST00000395936 816 ntTSL 3 BASIC16.28■□□□□ 0.2
VRK3Q8IV63 AC092474.2-201ENST00000424288 719 ntBASIC16.28■□□□□ 0.2
VRK3Q8IV63 AC004832.2-201ENST00000426397 482 ntBASIC16.28■□□□□ 0.2
VRK3Q8IV63 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC16.28■□□□□ 0.2
VRK3Q8IV63 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC16.28■□□□□ 0.2
VRK3Q8IV63 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
VRK3Q8IV63 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC16.28■□□□□ 0.2
VRK3Q8IV63 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC16.28■□□□□ 0.2
VRK3Q8IV63 AC002347.1-201ENST00000569543 541 ntBASIC16.28■□□□□ 0.2
VRK3Q8IV63 MIR3909-201ENST00000579518 119 ntBASIC16.28■□□□□ 0.2
VRK3Q8IV63 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC16.28■□□□□ 0.2
VRK3Q8IV63 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
VRK3Q8IV63 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC16.28■□□□□ 0.2
VRK3Q8IV63 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC16.28■□□□□ 0.2
VRK3Q8IV63 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
VRK3Q8IV63 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
VRK3Q8IV63 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
VRK3Q8IV63 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC16.28■□□□□ 0.2
VRK3Q8IV63 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
VRK3Q8IV63 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
VRK3Q8IV63 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
VRK3Q8IV63 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
VRK3Q8IV63 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC16.28■□□□□ 0.2
VRK3Q8IV63 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
VRK3Q8IV63 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC16.27■□□□□ 0.2
VRK3Q8IV63 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
VRK3Q8IV63 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
VRK3Q8IV63 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
VRK3Q8IV63 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
VRK3Q8IV63 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
VRK3Q8IV63 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
VRK3Q8IV63 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
VRK3Q8IV63 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
VRK3Q8IV63 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
VRK3Q8IV63 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC16.27■□□□□ 0.2
VRK3Q8IV63 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
VRK3Q8IV63 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC16.27■□□□□ 0.2
VRK3Q8IV63 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
VRK3Q8IV63 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
VRK3Q8IV63 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC16.27■□□□□ 0.2
VRK3Q8IV63 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
VRK3Q8IV63 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
VRK3Q8IV63 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
VRK3Q8IV63 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
VRK3Q8IV63 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
VRK3Q8IV63 CD99-202ENST00000381180 530 ntTSL 2 BASIC16.27■□□□□ 0.2
VRK3Q8IV63 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
VRK3Q8IV63 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
VRK3Q8IV63 MCCD1P2-201ENST00000423228 335 ntBASIC16.27■□□□□ 0.2
VRK3Q8IV63 AC109635.5-201ENST00000533593 962 ntBASIC16.27■□□□□ 0.2
VRK3Q8IV63 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC16.27■□□□□ 0.2
VRK3Q8IV63 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC16.27■□□□□ 0.2
VRK3Q8IV63 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC16.27■□□□□ 0.2
VRK3Q8IV63 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
VRK3Q8IV63 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
VRK3Q8IV63 AC099522.2-201ENST00000607001 744 ntBASIC16.27■□□□□ 0.2
VRK3Q8IV63 AC091812.2-201ENST00000619081 385 ntBASIC16.27■□□□□ 0.2
VRK3Q8IV63 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
VRK3Q8IV63 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC16.27■□□□□ 0.2
VRK3Q8IV63 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
VRK3Q8IV63 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.19
VRK3Q8IV63 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC16.27■□□□□ 0.19
VRK3Q8IV63 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC16.27■□□□□ 0.19
VRK3Q8IV63 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
VRK3Q8IV63 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.19
VRK3Q8IV63 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
VRK3Q8IV63 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC16.27■□□□□ 0.19
VRK3Q8IV63 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
VRK3Q8IV63 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
VRK3Q8IV63 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
VRK3Q8IV63 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC16.27■□□□□ 0.19
VRK3Q8IV63 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC16.26■□□□□ 0.19
VRK3Q8IV63 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
VRK3Q8IV63 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VRK3Q8IV63 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VRK3Q8IV63 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC16.26■□□□□ 0.19
VRK3Q8IV63 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC16.26■□□□□ 0.19
VRK3Q8IV63 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
VRK3Q8IV63 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC16.26■□□□□ 0.19
VRK3Q8IV63 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VRK3Q8IV63 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC16.26■□□□□ 0.19
VRK3Q8IV63 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC16.26■□□□□ 0.19
VRK3Q8IV63 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
VRK3Q8IV63 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VRK3Q8IV63 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VRK3Q8IV63 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC16.26■□□□□ 0.19
VRK3Q8IV63 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
VRK3Q8IV63 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VRK3Q8IV63 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
VRK3Q8IV63 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VRK3Q8IV63 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC16.26■□□□□ 0.19
VRK3Q8IV63 YBX2P1-201ENST00000394192 760 ntBASIC16.26■□□□□ 0.19
VRK3Q8IV63 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC16.26■□□□□ 0.19
VRK3Q8IV63 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC16.26■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 34.6 ms