Protein–RNA interactions for Protein: Q7Z3V4

UBE3B, Ubiquitin-protein ligase E3B, humanhuman

Predictions only

Length 1,068 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3BQ7Z3V4 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
UBE3BQ7Z3V4 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
UBE3BQ7Z3V4 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
UBE3BQ7Z3V4 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC20.71■□□□□ 0.91
UBE3BQ7Z3V4 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
UBE3BQ7Z3V4 BCRP1-201ENST00000444246 691 ntBASIC20.71■□□□□ 0.91
UBE3BQ7Z3V4 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC20.71■□□□□ 0.91
UBE3BQ7Z3V4 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC20.71■□□□□ 0.91
UBE3BQ7Z3V4 QPRT-203ENST00000562473 579 ntTSL 3 BASIC20.71■□□□□ 0.91
UBE3BQ7Z3V4 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
UBE3BQ7Z3V4 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
UBE3BQ7Z3V4 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
UBE3BQ7Z3V4 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
UBE3BQ7Z3V4 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
UBE3BQ7Z3V4 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
UBE3BQ7Z3V4 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
UBE3BQ7Z3V4 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC20.71■□□□□ 0.91
UBE3BQ7Z3V4 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC20.71■□□□□ 0.91
UBE3BQ7Z3V4 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC20.71■□□□□ 0.91
UBE3BQ7Z3V4 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
UBE3BQ7Z3V4 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
UBE3BQ7Z3V4 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC20.7■□□□□ 0.9
UBE3BQ7Z3V4 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
UBE3BQ7Z3V4 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
UBE3BQ7Z3V4 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
UBE3BQ7Z3V4 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
UBE3BQ7Z3V4 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
UBE3BQ7Z3V4 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
UBE3BQ7Z3V4 BAD-202ENST00000394531 631 ntTSL 3 BASIC20.7■□□□□ 0.9
UBE3BQ7Z3V4 PP14571-201ENST00000404327 934 ntTSL 2 BASIC20.7■□□□□ 0.9
UBE3BQ7Z3V4 AC093214.1-201ENST00000511688 1107 ntBASIC20.7■□□□□ 0.9
UBE3BQ7Z3V4 BAD-207ENST00000544785 525 ntTSL 3 BASIC20.7■□□□□ 0.9
UBE3BQ7Z3V4 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC20.7■□□□□ 0.9
UBE3BQ7Z3V4 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
UBE3BQ7Z3V4 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
UBE3BQ7Z3V4 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
UBE3BQ7Z3V4 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
UBE3BQ7Z3V4 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
UBE3BQ7Z3V4 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
UBE3BQ7Z3V4 FO538757.1-201ENST00000623083 1397 ntBASIC20.7■□□□□ 0.9
UBE3BQ7Z3V4 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
UBE3BQ7Z3V4 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
UBE3BQ7Z3V4 GGT4P-201ENST00000623672 1708 ntBASIC20.7■□□□□ 0.9
UBE3BQ7Z3V4 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
UBE3BQ7Z3V4 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
UBE3BQ7Z3V4 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
UBE3BQ7Z3V4 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
UBE3BQ7Z3V4 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
UBE3BQ7Z3V4 AC078925.2-201ENST00000624013 1973 ntBASIC20.69■□□□□ 0.9
UBE3BQ7Z3V4 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC20.69■□□□□ 0.9
UBE3BQ7Z3V4 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
UBE3BQ7Z3V4 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
UBE3BQ7Z3V4 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
UBE3BQ7Z3V4 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC20.69■□□□□ 0.9
UBE3BQ7Z3V4 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
UBE3BQ7Z3V4 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
UBE3BQ7Z3V4 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC20.69■□□□□ 0.9
UBE3BQ7Z3V4 TREML5P-201ENST00000421694 576 ntBASIC20.69■□□□□ 0.9
UBE3BQ7Z3V4 FAM8A3P-201ENST00000427218 844 ntBASIC20.69■□□□□ 0.9
UBE3BQ7Z3V4 AC055876.3-201ENST00000431496 288 ntBASIC20.69■□□□□ 0.9
UBE3BQ7Z3V4 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC20.69■□□□□ 0.9
UBE3BQ7Z3V4 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC20.69■□□□□ 0.9
UBE3BQ7Z3V4 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
UBE3BQ7Z3V4 AC140878.1-201ENST00000565277 250 ntBASIC20.69■□□□□ 0.9
UBE3BQ7Z3V4 LINC02084-201ENST00000606069 1096 ntBASIC20.69■□□□□ 0.9
UBE3BQ7Z3V4 AC138649.4-201ENST00000612222 287 ntBASIC20.69■□□□□ 0.9
UBE3BQ7Z3V4 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
UBE3BQ7Z3V4 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
UBE3BQ7Z3V4 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
UBE3BQ7Z3V4 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC20.69■□□□□ 0.9
UBE3BQ7Z3V4 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
UBE3BQ7Z3V4 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
UBE3BQ7Z3V4 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC20.69■□□□□ 0.9
UBE3BQ7Z3V4 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
UBE3BQ7Z3V4 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
UBE3BQ7Z3V4 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
UBE3BQ7Z3V4 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
UBE3BQ7Z3V4 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
UBE3BQ7Z3V4 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC20.68■□□□□ 0.9
UBE3BQ7Z3V4 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC20.68■□□□□ 0.9
UBE3BQ7Z3V4 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC20.68■□□□□ 0.9
UBE3BQ7Z3V4 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
UBE3BQ7Z3V4 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
UBE3BQ7Z3V4 GPAA1P2-202ENST00000606848 1787 ntBASIC20.68■□□□□ 0.9
UBE3BQ7Z3V4 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
UBE3BQ7Z3V4 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
UBE3BQ7Z3V4 CENPM-205ENST00000404067 905 ntTSL 3 BASIC20.68■□□□□ 0.9
UBE3BQ7Z3V4 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC20.68■□□□□ 0.9
UBE3BQ7Z3V4 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
UBE3BQ7Z3V4 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC20.68■□□□□ 0.9
UBE3BQ7Z3V4 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC20.68■□□□□ 0.9
UBE3BQ7Z3V4 INO80C-206ENST00000586489 594 ntTSL 3 BASIC20.68■□□□□ 0.9
UBE3BQ7Z3V4 AL096865.1-201ENST00000606796 927 ntBASIC20.68■□□□□ 0.9
UBE3BQ7Z3V4 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
UBE3BQ7Z3V4 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
UBE3BQ7Z3V4 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
UBE3BQ7Z3V4 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC20.68■□□□□ 0.9
UBE3BQ7Z3V4 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
UBE3BQ7Z3V4 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
UBE3BQ7Z3V4 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 51.2 ms