Protein–RNA interactions for Protein: P51790

CLCN3, H(+)/Cl(-) exchange transporter 3, humanhuman

Predictions only

Length 818 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3P51790 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CLCN3P51790 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CLCN3P51790 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CLCN3P51790 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC18.27■□□□□ 0.51
CLCN3P51790 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC18.27■□□□□ 0.51
CLCN3P51790 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
CLCN3P51790 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC18.27■□□□□ 0.51
CLCN3P51790 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC18.27■□□□□ 0.51
CLCN3P51790 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
CLCN3P51790 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC18.27■□□□□ 0.51
CLCN3P51790 FO538757.1-201ENST00000623083 1397 ntBASIC18.27■□□□□ 0.51
CLCN3P51790 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.51
CLCN3P51790 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
CLCN3P51790 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC18.26■□□□□ 0.51
CLCN3P51790 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC18.26■□□□□ 0.51
CLCN3P51790 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
CLCN3P51790 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CLCN3P51790 AP3S2-216ENST00000617003 1561 ntBASIC18.26■□□□□ 0.51
CLCN3P51790 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
CLCN3P51790 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC18.26■□□□□ 0.51
CLCN3P51790 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CLCN3P51790 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CLCN3P51790 LETM1P2-201ENST00000597330 2178 ntBASIC18.26■□□□□ 0.51
CLCN3P51790 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CLCN3P51790 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CLCN3P51790 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC18.26■□□□□ 0.51
CLCN3P51790 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC18.26■□□□□ 0.51
CLCN3P51790 AC055876.3-201ENST00000431496 288 ntBASIC18.26■□□□□ 0.51
CLCN3P51790 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC18.26■□□□□ 0.51
CLCN3P51790 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CLCN3P51790 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC18.26■□□□□ 0.51
CLCN3P51790 INO80C-206ENST00000586489 594 ntTSL 3 BASIC18.26■□□□□ 0.51
CLCN3P51790 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC18.26■□□□□ 0.51
CLCN3P51790 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CLCN3P51790 AC092364.2-202ENST00000597012 1073 ntBASIC18.26■□□□□ 0.51
CLCN3P51790 AL096865.1-201ENST00000606796 927 ntBASIC18.26■□□□□ 0.51
CLCN3P51790 AC138649.4-201ENST00000612222 287 ntBASIC18.26■□□□□ 0.51
CLCN3P51790 AL139011.1-202ENST00000642063 584 ntBASIC18.26■□□□□ 0.51
CLCN3P51790 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
CLCN3P51790 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CLCN3P51790 AC105020.1-201ENST00000435356 2205 ntBASIC18.26■□□□□ 0.51
CLCN3P51790 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
CLCN3P51790 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC18.26■□□□□ 0.51
CLCN3P51790 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC18.26■□□□□ 0.51
CLCN3P51790 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CLCN3P51790 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CLCN3P51790 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC18.26■□□□□ 0.51
CLCN3P51790 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CLCN3P51790 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC18.25■□□□□ 0.51
CLCN3P51790 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC18.25■□□□□ 0.51
CLCN3P51790 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
CLCN3P51790 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
CLCN3P51790 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
CLCN3P51790 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
CLCN3P51790 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC18.25■□□□□ 0.51
CLCN3P51790 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CLCN3P51790 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CLCN3P51790 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
CLCN3P51790 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC18.25■□□□□ 0.51
CLCN3P51790 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CLCN3P51790 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CLCN3P51790 PP14571-201ENST00000404327 934 ntTSL 2 BASIC18.25■□□□□ 0.51
CLCN3P51790 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC18.25■□□□□ 0.51
CLCN3P51790 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC18.25■□□□□ 0.51
CLCN3P51790 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC18.25■□□□□ 0.51
CLCN3P51790 AC140878.1-201ENST00000565277 250 ntBASIC18.25■□□□□ 0.51
CLCN3P51790 MIR3197-201ENST00000582241 73 ntBASIC18.25■□□□□ 0.51
CLCN3P51790 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC18.25■□□□□ 0.51
CLCN3P51790 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC18.25■□□□□ 0.51
CLCN3P51790 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC18.25■□□□□ 0.51
CLCN3P51790 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC18.25■□□□□ 0.51
CLCN3P51790 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC18.25■□□□□ 0.51
CLCN3P51790 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
CLCN3P51790 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC18.25■□□□□ 0.51
CLCN3P51790 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
CLCN3P51790 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CLCN3P51790 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CLCN3P51790 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CLCN3P51790 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC18.24■□□□□ 0.51
CLCN3P51790 AMT-206ENST00000458307 1860 ntTSL 2 BASIC18.24■□□□□ 0.51
CLCN3P51790 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CLCN3P51790 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC18.24■□□□□ 0.51
CLCN3P51790 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CLCN3P51790 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC18.24■□□□□ 0.51
CLCN3P51790 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CLCN3P51790 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC18.24■□□□□ 0.51
CLCN3P51790 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CLCN3P51790 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC18.24■□□□□ 0.51
CLCN3P51790 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CLCN3P51790 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CLCN3P51790 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC18.24■□□□□ 0.51
CLCN3P51790 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CLCN3P51790 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CLCN3P51790 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
CLCN3P51790 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC18.24■□□□□ 0.51
CLCN3P51790 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC18.24■□□□□ 0.51
CLCN3P51790 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC18.24■□□□□ 0.51
CLCN3P51790 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CLCN3P51790 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC18.24■□□□□ 0.51
CLCN3P51790 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC18.24■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 37.1 ms