Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC13.72□□□□□ -0.21
CDX1P47902 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC13.72□□□□□ -0.21
CDX1P47902 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
CDX1P47902 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC13.72□□□□□ -0.21
CDX1P47902 LILRP2-201ENST00000413439 2127 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
CDX1P47902 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC13.72□□□□□ -0.21
CDX1P47902 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.21
CDX1P47902 GLG1-201ENST00000205061 8261 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.21
CDX1P47902 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
CDX1P47902 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC13.71□□□□□ -0.21
CDX1P47902 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC13.71□□□□□ -0.21
CDX1P47902 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
CDX1P47902 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
CDX1P47902 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
CDX1P47902 POU2F2-207ENST00000529067 2657 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
CDX1P47902 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC13.71□□□□□ -0.21
CDX1P47902 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.21
CDX1P47902 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
CDX1P47902 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
CDX1P47902 MROH6-201ENST00000398882 3469 ntAPPRIS P2 TSL 5 BASIC13.71□□□□□ -0.21
CDX1P47902 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
CDX1P47902 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC13.71□□□□□ -0.21
CDX1P47902 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
CDX1P47902 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
CDX1P47902 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
CDX1P47902 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
CDX1P47902 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
CDX1P47902 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC13.71□□□□□ -0.21
CDX1P47902 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC13.71□□□□□ -0.21
CDX1P47902 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC13.71□□□□□ -0.21
CDX1P47902 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC13.71□□□□□ -0.21
CDX1P47902 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC13.71□□□□□ -0.21
CDX1P47902 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC13.71□□□□□ -0.21
CDX1P47902 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC13.71□□□□□ -0.21
CDX1P47902 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC13.71□□□□□ -0.21
CDX1P47902 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
CDX1P47902 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC13.71□□□□□ -0.21
CDX1P47902 SLC25A6P4-201ENST00000586535 553 ntBASIC13.71□□□□□ -0.21
CDX1P47902 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC13.71□□□□□ -0.21
CDX1P47902 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC13.71□□□□□ -0.21
CDX1P47902 AP000867.4-201ENST00000641616 219 ntBASIC13.71□□□□□ -0.21
CDX1P47902 DTNB-228ENST00000496972 2328 ntTSL 2 BASIC13.71□□□□□ -0.21
CDX1P47902 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
CDX1P47902 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
CDX1P47902 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC13.71□□□□□ -0.21
CDX1P47902 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.21
CDX1P47902 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
CDX1P47902 COG3-201ENST00000349995 4498 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
CDX1P47902 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
CDX1P47902 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
CDX1P47902 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC13.71□□□□□ -0.22
CDX1P47902 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
CDX1P47902 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
CDX1P47902 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.22
CDX1P47902 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC13.71□□□□□ -0.22
CDX1P47902 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
CDX1P47902 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC13.71□□□□□ -0.22
CDX1P47902 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC13.71□□□□□ -0.22
CDX1P47902 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CDX1P47902 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CDX1P47902 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC13.7□□□□□ -0.22
CDX1P47902 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
CDX1P47902 KRT18P55-202ENST00000578578 1546 ntBASIC13.7□□□□□ -0.22
CDX1P47902 SCAMP2-201ENST00000268099 2453 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CDX1P47902 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
CDX1P47902 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
CDX1P47902 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC13.7□□□□□ -0.22
CDX1P47902 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC13.7□□□□□ -0.22
CDX1P47902 CNPY1-203ENST00000636372 2259 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
CDX1P47902 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
CDX1P47902 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC13.7□□□□□ -0.22
CDX1P47902 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC13.7□□□□□ -0.22
CDX1P47902 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC13.7□□□□□ -0.22
CDX1P47902 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CDX1P47902 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
CDX1P47902 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC13.7□□□□□ -0.22
CDX1P47902 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
CDX1P47902 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
CDX1P47902 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC13.7□□□□□ -0.22
CDX1P47902 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
CDX1P47902 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CDX1P47902 RPS2P28-201ENST00000314255 741 ntBASIC13.7□□□□□ -0.22
CDX1P47902 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CDX1P47902 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CDX1P47902 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CDX1P47902 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
CDX1P47902 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC13.7□□□□□ -0.22
CDX1P47902 KRT18P67-201ENST00000432816 1264 ntBASIC13.7□□□□□ -0.22
CDX1P47902 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC13.7□□□□□ -0.22
CDX1P47902 AC073648.2-201ENST00000510116 352 ntBASIC13.7□□□□□ -0.22
CDX1P47902 PENK-208ENST00000523051 772 ntTSL 5 BASIC13.7□□□□□ -0.22
CDX1P47902 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC13.7□□□□□ -0.22
CDX1P47902 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC13.7□□□□□ -0.22
CDX1P47902 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC13.7□□□□□ -0.22
CDX1P47902 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC13.7□□□□□ -0.22
CDX1P47902 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
CDX1P47902 AL773604.1-201ENST00000617417 272 ntBASIC13.7□□□□□ -0.22
CDX1P47902 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC13.7□□□□□ -0.22
CDX1P47902 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC13.7□□□□□ -0.22
CDX1P47902 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 64.3 ms