Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
SOX3P41225 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC15.75■□□□□ 0.11
SOX3P41225 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
SOX3P41225 LINC00554-201ENST00000564841 3011 ntBASIC15.75■□□□□ 0.11
SOX3P41225 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.11
SOX3P41225 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC15.75■□□□□ 0.11
SOX3P41225 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
SOX3P41225 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC15.75■□□□□ 0.11
SOX3P41225 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC15.75■□□□□ 0.11
SOX3P41225 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
SOX3P41225 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
SOX3P41225 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
SOX3P41225 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC15.75■□□□□ 0.11
SOX3P41225 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC15.75■□□□□ 0.11
SOX3P41225 SLC25A1P3-201ENST00000395415 828 ntBASIC15.75■□□□□ 0.11
SOX3P41225 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.11
SOX3P41225 IGLL3P-201ENST00000412472 434 ntBASIC15.75■□□□□ 0.11
SOX3P41225 AC023274.1-201ENST00000418278 595 ntBASIC15.75■□□□□ 0.11
SOX3P41225 BX842568.4-201ENST00000421222 227 ntBASIC15.75■□□□□ 0.11
SOX3P41225 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
SOX3P41225 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC15.75■□□□□ 0.11
SOX3P41225 AC087163.2-201ENST00000457299 853 ntBASIC15.75■□□□□ 0.11
SOX3P41225 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC15.75■□□□□ 0.11
SOX3P41225 POLD4-207ENST00000531239 584 ntTSL 2 BASIC15.75■□□□□ 0.11
SOX3P41225 AC092865.5-201ENST00000545435 363 ntBASIC15.75■□□□□ 0.11
SOX3P41225 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
SOX3P41225 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC15.75■□□□□ 0.11
SOX3P41225 AC040169.1-201ENST00000565382 521 ntBASIC15.75■□□□□ 0.11
SOX3P41225 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC15.75■□□□□ 0.11
SOX3P41225 CYB561-216ENST00000582297 897 ntTSL 3 BASIC15.75■□□□□ 0.11
SOX3P41225 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC15.75■□□□□ 0.11
SOX3P41225 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC15.75■□□□□ 0.11
SOX3P41225 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC15.75■□□□□ 0.11
SOX3P41225 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
SOX3P41225 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC15.75■□□□□ 0.11
SOX3P41225 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC15.75■□□□□ 0.11
SOX3P41225 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC15.75■□□□□ 0.11
SOX3P41225 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
SOX3P41225 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
SOX3P41225 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC15.75■□□□□ 0.11
SOX3P41225 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
SOX3P41225 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC15.75■□□□□ 0.11
SOX3P41225 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
SOX3P41225 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.11
SOX3P41225 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC15.75■□□□□ 0.11
SOX3P41225 RNF216P1-203ENST00000404404 2427 ntBASIC15.75■□□□□ 0.11
SOX3P41225 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC15.75■□□□□ 0.11
SOX3P41225 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC15.75■□□□□ 0.11
SOX3P41225 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
SOX3P41225 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
SOX3P41225 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC15.75■□□□□ 0.11
SOX3P41225 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC15.75■□□□□ 0.11
SOX3P41225 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
SOX3P41225 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
SOX3P41225 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
SOX3P41225 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
SOX3P41225 GCK-209ENST00000616242 2260 ntTSL 5 BASIC15.74■□□□□ 0.11
SOX3P41225 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
SOX3P41225 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
SOX3P41225 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
SOX3P41225 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
SOX3P41225 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
SOX3P41225 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
SOX3P41225 FRMD6-AS1-201ENST00000617151 2229 ntBASIC15.74■□□□□ 0.11
SOX3P41225 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
SOX3P41225 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC15.74■□□□□ 0.11
SOX3P41225 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
SOX3P41225 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC15.74■□□□□ 0.11
SOX3P41225 AC026691.1-201ENST00000602502 2017 ntBASIC15.74■□□□□ 0.11
SOX3P41225 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
SOX3P41225 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
SOX3P41225 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
SOX3P41225 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
SOX3P41225 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC15.74■□□□□ 0.11
SOX3P41225 IMP4-203ENST00000409935 958 ntTSL 5 BASIC15.74■□□□□ 0.11
SOX3P41225 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
SOX3P41225 COX10-202ENST00000429152 875 ntTSL 2 BASIC15.74■□□□□ 0.11
SOX3P41225 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC15.74■□□□□ 0.11
SOX3P41225 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
SOX3P41225 CD63-210ENST00000550776 870 ntTSL 5 BASIC15.74■□□□□ 0.11
SOX3P41225 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC15.74■□□□□ 0.11
SOX3P41225 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
SOX3P41225 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC15.74■□□□□ 0.11
SOX3P41225 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
SOX3P41225 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC15.74■□□□□ 0.11
SOX3P41225 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
SOX3P41225 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC15.74■□□□□ 0.11
SOX3P41225 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
SOX3P41225 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC15.74■□□□□ 0.11
SOX3P41225 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
SOX3P41225 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
SOX3P41225 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC15.74■□□□□ 0.11
SOX3P41225 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC15.74■□□□□ 0.11
SOX3P41225 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
SOX3P41225 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
SOX3P41225 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC15.73■□□□□ 0.11
SOX3P41225 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
SOX3P41225 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
SOX3P41225 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
SOX3P41225 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 66.9 ms