Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC17.56■□□□□ 0.4
BDNFP23560 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
BDNFP23560 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
BDNFP23560 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
BDNFP23560 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
BDNFP23560 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
BDNFP23560 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
BDNFP23560 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
BDNFP23560 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC17.56■□□□□ 0.4
BDNFP23560 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
BDNFP23560 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC17.56■□□□□ 0.4
BDNFP23560 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
BDNFP23560 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
BDNFP23560 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC17.55■□□□□ 0.4
BDNFP23560 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
BDNFP23560 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
BDNFP23560 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC17.55■□□□□ 0.4
BDNFP23560 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
BDNFP23560 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC17.55■□□□□ 0.4
BDNFP23560 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
BDNFP23560 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC17.55■□□□□ 0.4
BDNFP23560 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
BDNFP23560 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC17.55■□□□□ 0.4
BDNFP23560 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
BDNFP23560 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
BDNFP23560 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
BDNFP23560 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC17.55■□□□□ 0.4
BDNFP23560 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC17.55■□□□□ 0.4
BDNFP23560 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC17.55■□□□□ 0.4
BDNFP23560 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC17.55■□□□□ 0.4
BDNFP23560 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC17.55■□□□□ 0.4
BDNFP23560 AC008267.7-201ENST00000624570 1194 ntBASIC17.55■□□□□ 0.4
BDNFP23560 LINC00628-201ENST00000628516 1289 ntBASIC17.55■□□□□ 0.4
BDNFP23560 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC17.55■□□□□ 0.4
BDNFP23560 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC17.55■□□□□ 0.4
BDNFP23560 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
BDNFP23560 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
BDNFP23560 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC17.55■□□□□ 0.4
BDNFP23560 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
BDNFP23560 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
BDNFP23560 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
BDNFP23560 AC022211.2-201ENST00000585075 2527 ntBASIC17.55■□□□□ 0.4
BDNFP23560 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC17.55■□□□□ 0.4
BDNFP23560 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC17.55■□□□□ 0.4
BDNFP23560 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
BDNFP23560 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
BDNFP23560 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC17.55■□□□□ 0.4
BDNFP23560 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
BDNFP23560 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
BDNFP23560 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC17.55■□□□□ 0.4
BDNFP23560 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
BDNFP23560 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
BDNFP23560 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC17.54■□□□□ 0.4
BDNFP23560 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
BDNFP23560 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
BDNFP23560 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
BDNFP23560 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
BDNFP23560 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC17.54■□□□□ 0.4
BDNFP23560 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC17.54■□□□□ 0.4
BDNFP23560 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
BDNFP23560 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
BDNFP23560 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
BDNFP23560 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
BDNFP23560 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
BDNFP23560 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC17.54■□□□□ 0.4
BDNFP23560 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC17.54■□□□□ 0.4
BDNFP23560 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC17.54■□□□□ 0.4
BDNFP23560 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
BDNFP23560 KRT8P23-201ENST00000560090 1207 ntBASIC17.54■□□□□ 0.4
BDNFP23560 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
BDNFP23560 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
BDNFP23560 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC17.54■□□□□ 0.4
BDNFP23560 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
BDNFP23560 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
BDNFP23560 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
BDNFP23560 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
BDNFP23560 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
BDNFP23560 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
BDNFP23560 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
BDNFP23560 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
BDNFP23560 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC17.54■□□□□ 0.4
BDNFP23560 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
BDNFP23560 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
BDNFP23560 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
BDNFP23560 AMT-206ENST00000458307 1860 ntTSL 2 BASIC17.54■□□□□ 0.4
BDNFP23560 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
BDNFP23560 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
BDNFP23560 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
BDNFP23560 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
BDNFP23560 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC17.54■□□□□ 0.4
BDNFP23560 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
BDNFP23560 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC17.54■□□□□ 0.4
BDNFP23560 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
BDNFP23560 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
BDNFP23560 GCK-202ENST00000345378 2421 ntTSL 2 BASIC17.53■□□□□ 0.4
BDNFP23560 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
BDNFP23560 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC17.53■□□□□ 0.4
BDNFP23560 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
BDNFP23560 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC17.53■□□□□ 0.4
BDNFP23560 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC17.53■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms