Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC16.84■□□□□ 0.29
VIMP08670 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
VIMP08670 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC16.84■□□□□ 0.29
VIMP08670 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
VIMP08670 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC16.84■□□□□ 0.29
VIMP08670 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC16.84■□□□□ 0.29
VIMP08670 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC16.84■□□□□ 0.29
VIMP08670 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC16.84■□□□□ 0.29
VIMP08670 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC16.84■□□□□ 0.29
VIMP08670 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC16.84■□□□□ 0.29
VIMP08670 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC16.84■□□□□ 0.29
VIMP08670 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC16.84■□□□□ 0.29
VIMP08670 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
VIMP08670 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC16.84■□□□□ 0.29
VIMP08670 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
VIMP08670 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC16.84■□□□□ 0.29
VIMP08670 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
VIMP08670 MME-217ENST00000616757 1315 ntTSL 5 BASIC16.84■□□□□ 0.29
VIMP08670 TP53INP2-201ENST00000374809 4018 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
VIMP08670 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
VIMP08670 RIPK1-201ENST00000259808 4160 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
VIMP08670 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
VIMP08670 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
VIMP08670 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
VIMP08670 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
VIMP08670 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC16.84■□□□□ 0.29
VIMP08670 OSBPL10-201ENST00000396556 6600 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
VIMP08670 PC-204ENST00000524491 1714 ntTSL 2 BASIC16.84■□□□□ 0.29
VIMP08670 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
VIMP08670 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
VIMP08670 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
VIMP08670 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC16.84■□□□□ 0.29
VIMP08670 DTNB-228ENST00000496972 2328 ntTSL 2 BASIC16.84■□□□□ 0.29
VIMP08670 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC16.84■□□□□ 0.29
VIMP08670 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
VIMP08670 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC16.83■□□□□ 0.29
VIMP08670 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC16.83■□□□□ 0.29
VIMP08670 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.29
VIMP08670 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.29
VIMP08670 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC16.83■□□□□ 0.29
VIMP08670 PIK3R1-211ENST00000521381 7011 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
VIMP08670 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
VIMP08670 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.29
VIMP08670 SEMA5B-201ENST00000195173 4523 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
VIMP08670 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
VIMP08670 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
VIMP08670 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
VIMP08670 KCNC1-201ENST00000265969 4295 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
VIMP08670 PRORSD1P-201ENST00000295112 541 ntBASIC16.83■□□□□ 0.28
VIMP08670 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
VIMP08670 TSPY14P-201ENST00000303979 915 ntBASIC16.83■□□□□ 0.28
VIMP08670 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
VIMP08670 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC16.83■□□□□ 0.28
VIMP08670 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC16.83■□□□□ 0.28
VIMP08670 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
VIMP08670 AP000523.1-201ENST00000398242 1049 ntBASIC16.83■□□□□ 0.28
VIMP08670 USP19-203ENST00000398892 4622 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
VIMP08670 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC16.83■□□□□ 0.28
VIMP08670 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC16.83■□□□□ 0.28
VIMP08670 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC16.83■□□□□ 0.28
VIMP08670 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC16.83■□□□□ 0.28
VIMP08670 DHDH-203ENST00000522614 776 ntTSL 5 BASIC16.83■□□□□ 0.28
VIMP08670 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
VIMP08670 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC16.83■□□□□ 0.28
VIMP08670 REXO2-216ENST00000544196 452 ntTSL 3 BASIC16.83■□□□□ 0.28
VIMP08670 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC16.83■□□□□ 0.28
VIMP08670 AL136038.4-201ENST00000603606 1261 ntBASIC16.83■□□□□ 0.28
VIMP08670 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC16.83■□□□□ 0.28
VIMP08670 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC16.83■□□□□ 0.28
VIMP08670 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC16.83■□□□□ 0.28
VIMP08670 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
VIMP08670 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC16.83■□□□□ 0.28
VIMP08670 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC16.83■□□□□ 0.28
VIMP08670 ADAMTS2-201ENST00000251582 6754 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
VIMP08670 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.28
VIMP08670 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
VIMP08670 ADAMTS15-201ENST00000299164 5673 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
VIMP08670 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
VIMP08670 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
VIMP08670 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
VIMP08670 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
VIMP08670 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
VIMP08670 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
VIMP08670 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
VIMP08670 FKRP-201ENST00000318584 3332 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
VIMP08670 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
VIMP08670 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
VIMP08670 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
VIMP08670 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
VIMP08670 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
VIMP08670 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
VIMP08670 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
VIMP08670 GLUL-202ENST00000331872 4364 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
VIMP08670 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
VIMP08670 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
VIMP08670 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC16.82■□□□□ 0.28
VIMP08670 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
VIMP08670 KRT17P2-201ENST00000300992 1314 ntBASIC16.82■□□□□ 0.28
VIMP08670 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC16.82■□□□□ 0.28
VIMP08670 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 57.7 ms