Protein–RNA interactions for Protein: P06400

RB1, Retinoblastoma-associated protein, humanhuman

Predictions only

Length 928 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RB1P06400 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
RB1P06400 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC17.51■□□□□ 0.39
RB1P06400 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC17.51■□□□□ 0.39
RB1P06400 VMO1-203ENST00000416307 712 ntTSL 2 BASIC17.51■□□□□ 0.39
RB1P06400 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
RB1P06400 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC17.51■□□□□ 0.39
RB1P06400 RN7SL837P-201ENST00000463010 287 ntBASIC17.51■□□□□ 0.39
RB1P06400 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC17.51■□□□□ 0.39
RB1P06400 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
RB1P06400 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
RB1P06400 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
RB1P06400 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC17.51■□□□□ 0.39
RB1P06400 ELOF1-208ENST00000591912 899 ntTSL 5 BASIC17.51■□□□□ 0.39
RB1P06400 AL138688.1-201ENST00000624851 1594 ntBASIC17.51■□□□□ 0.39
RB1P06400 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC17.51■□□□□ 0.39
RB1P06400 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
RB1P06400 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
RB1P06400 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC17.51■□□□□ 0.39
RB1P06400 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
RB1P06400 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
RB1P06400 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
RB1P06400 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
RB1P06400 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC17.5■□□□□ 0.39
RB1P06400 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
RB1P06400 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC17.5■□□□□ 0.39
RB1P06400 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC17.5■□□□□ 0.39
RB1P06400 TTTY23B-201ENST00000442790 549 ntBASIC17.5■□□□□ 0.39
RB1P06400 MYCLP2-201ENST00000449268 967 ntBASIC17.5■□□□□ 0.39
RB1P06400 TPRX2P-201ENST00000535362 881 ntBASIC17.5■□□□□ 0.39
RB1P06400 GNG2-209ENST00000555472 908 ntAPPRIS P1 TSL 3 BASIC17.5■□□□□ 0.39
RB1P06400 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC17.5■□□□□ 0.39
RB1P06400 5S_rRNA.22-201ENST00000614916 106 ntBASIC17.5■□□□□ 0.39
RB1P06400 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC17.5■□□□□ 0.39
RB1P06400 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
RB1P06400 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
RB1P06400 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC17.5■□□□□ 0.39
RB1P06400 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
RB1P06400 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
RB1P06400 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC17.5■□□□□ 0.39
RB1P06400 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC17.5■□□□□ 0.39
RB1P06400 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC17.5■□□□□ 0.39
RB1P06400 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
RB1P06400 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
RB1P06400 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
RB1P06400 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC17.5■□□□□ 0.39
RB1P06400 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC17.5■□□□□ 0.39
RB1P06400 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC17.5■□□□□ 0.39
RB1P06400 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC17.5■□□□□ 0.39
RB1P06400 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
RB1P06400 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
RB1P06400 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC17.5■□□□□ 0.39
RB1P06400 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC17.49■□□□□ 0.39
RB1P06400 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
RB1P06400 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC17.49■□□□□ 0.39
RB1P06400 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
RB1P06400 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
RB1P06400 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
RB1P06400 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
RB1P06400 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
RB1P06400 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
RB1P06400 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
RB1P06400 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
RB1P06400 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
RB1P06400 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
RB1P06400 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
RB1P06400 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
RB1P06400 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
RB1P06400 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
RB1P06400 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC17.49■□□□□ 0.39
RB1P06400 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
RB1P06400 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC17.49■□□□□ 0.39
RB1P06400 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC17.49■□□□□ 0.39
RB1P06400 RPL28-204ENST00000431533 590 ntTSL 2 BASIC17.49■□□□□ 0.39
RB1P06400 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
RB1P06400 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
RB1P06400 SPDYE18-201ENST00000510091 1050 ntBASIC17.49■□□□□ 0.39
RB1P06400 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC17.49■□□□□ 0.39
RB1P06400 FUZ-207ENST00000526575 482 ntTSL 4 BASIC17.49■□□□□ 0.39
RB1P06400 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
RB1P06400 RPL28-206ENST00000558752 671 ntTSL 3 BASIC17.49■□□□□ 0.39
RB1P06400 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC17.49■□□□□ 0.39
RB1P06400 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC17.49■□□□□ 0.39
RB1P06400 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
RB1P06400 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
RB1P06400 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
RB1P06400 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
RB1P06400 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
RB1P06400 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC17.49■□□□□ 0.39
RB1P06400 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC17.49■□□□□ 0.39
RB1P06400 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
RB1P06400 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
RB1P06400 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC17.49■□□□□ 0.39
RB1P06400 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
RB1P06400 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
RB1P06400 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
RB1P06400 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
RB1P06400 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC17.48■□□□□ 0.39
RB1P06400 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
RB1P06400 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC17.48■□□□□ 0.39
RB1P06400 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC17.48■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms