Protein–RNA interactions for Protein: O95475

SIX6, Homeobox protein SIX6, humanhuman

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX6O95475 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.16
SIX6O95475 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
SIX6O95475 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.16
SIX6O95475 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.16
SIX6O95475 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
SIX6O95475 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.16
SIX6O95475 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC14.02□□□□□ -0.16
SIX6O95475 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.16
SIX6O95475 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
SIX6O95475 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
SIX6O95475 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC14.02□□□□□ -0.16
SIX6O95475 AC092338.2-201ENST00000568827 1415 ntBASIC14.02□□□□□ -0.16
SIX6O95475 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
SIX6O95475 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
SIX6O95475 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
SIX6O95475 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC14.02□□□□□ -0.17
SIX6O95475 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
SIX6O95475 ENSA-206ENST00000361631 725 ntTSL 2 BASIC14.02□□□□□ -0.17
SIX6O95475 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC14.02□□□□□ -0.17
SIX6O95475 COX5BP2-201ENST00000392354 334 ntBASIC14.02□□□□□ -0.17
SIX6O95475 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC14.02□□□□□ -0.17
SIX6O95475 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
SIX6O95475 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC14.02□□□□□ -0.17
SIX6O95475 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC14.02□□□□□ -0.17
SIX6O95475 BX088651.1-201ENST00000540551 451 ntBASIC14.02□□□□□ -0.17
SIX6O95475 AC142086.2-201ENST00000569753 217 ntBASIC14.02□□□□□ -0.17
SIX6O95475 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC14.02□□□□□ -0.17
SIX6O95475 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.17
SIX6O95475 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
SIX6O95475 UNC13B-203ENST00000396787 5293 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
SIX6O95475 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
SIX6O95475 UBXN2B-201ENST00000399598 5068 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
SIX6O95475 RER1-203ENST00000378513 3000 ntTSL 3 BASIC14.02□□□□□ -0.17
SIX6O95475 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
SIX6O95475 PDE4A-203ENST00000380702 4781 ntAPPRIS P4 TSL 1 (best) BASIC14.02□□□□□ -0.17
SIX6O95475 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC14.02□□□□□ -0.17
SIX6O95475 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
SIX6O95475 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
SIX6O95475 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
SIX6O95475 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
SIX6O95475 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
SIX6O95475 OPA1-208ENST00000392438 6340 ntAPPRIS ALT1 TSL 1 (best) BASIC14.02□□□□□ -0.17
SIX6O95475 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
SIX6O95475 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC14.02□□□□□ -0.17
SIX6O95475 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
SIX6O95475 AXL-202ENST00000359092 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
SIX6O95475 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
SIX6O95475 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC14.01□□□□□ -0.17
SIX6O95475 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC14.01□□□□□ -0.17
SIX6O95475 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
SIX6O95475 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC14.01□□□□□ -0.17
SIX6O95475 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
SIX6O95475 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
SIX6O95475 ZNF280D-207ENST00000559237 4902 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
SIX6O95475 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
SIX6O95475 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC14.01□□□□□ -0.17
SIX6O95475 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
SIX6O95475 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC14.01□□□□□ -0.17
SIX6O95475 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
SIX6O95475 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
SIX6O95475 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
SIX6O95475 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
SIX6O95475 AFF4-201ENST00000265343 9552 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
SIX6O95475 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
SIX6O95475 DYSF-201ENST00000258104 6796 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
SIX6O95475 DYSF-204ENST00000409582 6790 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
SIX6O95475 DYSF-210ENST00000413539 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
SIX6O95475 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
SIX6O95475 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
SIX6O95475 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
SIX6O95475 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
SIX6O95475 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
SIX6O95475 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC14.01□□□□□ -0.17
SIX6O95475 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
SIX6O95475 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
SIX6O95475 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC14.01□□□□□ -0.17
SIX6O95475 C1QBPP2-201ENST00000528754 825 ntBASIC14.01□□□□□ -0.17
SIX6O95475 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
SIX6O95475 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC14.01□□□□□ -0.17
SIX6O95475 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
SIX6O95475 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC14.01□□□□□ -0.17
SIX6O95475 GRAMD4P8-201ENST00000605465 1115 ntBASIC14.01□□□□□ -0.17
SIX6O95475 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC14.01□□□□□ -0.17
SIX6O95475 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC14.01□□□□□ -0.17
SIX6O95475 USP36-201ENST00000312010 5234 ntAPPRIS P2 TSL 5 BASIC14.01□□□□□ -0.17
SIX6O95475 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
SIX6O95475 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
SIX6O95475 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
SIX6O95475 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC14.01□□□□□ -0.17
SIX6O95475 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
SIX6O95475 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC14.01□□□□□ -0.17
SIX6O95475 SDK1-210ENST00000615806 10258 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
SIX6O95475 ASF1A-201ENST00000229595 2362 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
SIX6O95475 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC14.01□□□□□ -0.17
SIX6O95475 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
SIX6O95475 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
SIX6O95475 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
SIX6O95475 CCNDBP1-201ENST00000300213 3660 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
SIX6O95475 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
SIX6O95475 RTEL1-205ENST00000370018 4955 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 74.3 ms