Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
SIX3O95343 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SIX3O95343 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
SIX3O95343 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
SIX3O95343 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
SIX3O95343 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
SIX3O95343 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC16.34■□□□□ 0.21
SIX3O95343 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SIX3O95343 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SIX3O95343 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SIX3O95343 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
SIX3O95343 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC16.34■□□□□ 0.21
SIX3O95343 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC16.34■□□□□ 0.21
SIX3O95343 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SIX3O95343 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
SIX3O95343 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC16.34■□□□□ 0.21
SIX3O95343 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SIX3O95343 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC16.34■□□□□ 0.21
SIX3O95343 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC16.34■□□□□ 0.21
SIX3O95343 KRT18P27-201ENST00000427733 1299 ntBASIC16.34■□□□□ 0.21
SIX3O95343 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC16.34■□□□□ 0.21
SIX3O95343 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC16.34■□□□□ 0.21
SIX3O95343 RPS15P9-201ENST00000494093 319 ntBASIC16.34■□□□□ 0.21
SIX3O95343 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC16.34■□□□□ 0.21
SIX3O95343 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SIX3O95343 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
SIX3O95343 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC16.34■□□□□ 0.21
SIX3O95343 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
SIX3O95343 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC16.34■□□□□ 0.21
SIX3O95343 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
SIX3O95343 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SIX3O95343 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC16.34■□□□□ 0.21
SIX3O95343 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
SIX3O95343 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC16.34■□□□□ 0.21
SIX3O95343 KRT8P39-201ENST00000396270 1433 ntBASIC16.34■□□□□ 0.21
SIX3O95343 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC16.34■□□□□ 0.21
SIX3O95343 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
SIX3O95343 MTHFR-217ENST00000641820 1569 ntBASIC16.34■□□□□ 0.21
SIX3O95343 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SIX3O95343 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SIX3O95343 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
SIX3O95343 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
SIX3O95343 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
SIX3O95343 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
SIX3O95343 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.21
SIX3O95343 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
SIX3O95343 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC16.33■□□□□ 0.2
SIX3O95343 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SIX3O95343 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SIX3O95343 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
SIX3O95343 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC16.33■□□□□ 0.2
SIX3O95343 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
SIX3O95343 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SIX3O95343 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SIX3O95343 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
SIX3O95343 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SIX3O95343 AC073621.1-201ENST00000392730 636 ntBASIC16.33■□□□□ 0.2
SIX3O95343 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC16.33■□□□□ 0.2
SIX3O95343 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
SIX3O95343 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC16.33■□□□□ 0.2
SIX3O95343 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC16.33■□□□□ 0.2
SIX3O95343 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC16.33■□□□□ 0.2
SIX3O95343 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC16.33■□□□□ 0.2
SIX3O95343 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
SIX3O95343 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
SIX3O95343 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC16.33■□□□□ 0.2
SIX3O95343 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC16.33■□□□□ 0.2
SIX3O95343 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SIX3O95343 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
SIX3O95343 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
SIX3O95343 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
SIX3O95343 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
SIX3O95343 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC16.33■□□□□ 0.2
SIX3O95343 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
SIX3O95343 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
SIX3O95343 BLK-205ENST00000529894 2017 ntTSL 5 BASIC16.33■□□□□ 0.2
SIX3O95343 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC16.33■□□□□ 0.2
SIX3O95343 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC16.33■□□□□ 0.2
SIX3O95343 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC16.33■□□□□ 0.2
SIX3O95343 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
SIX3O95343 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
SIX3O95343 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC16.33■□□□□ 0.2
SIX3O95343 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
SIX3O95343 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC16.33■□□□□ 0.2
SIX3O95343 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SIX3O95343 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
SIX3O95343 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SIX3O95343 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SIX3O95343 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SIX3O95343 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC16.32■□□□□ 0.2
SIX3O95343 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC16.32■□□□□ 0.2
SIX3O95343 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC16.32■□□□□ 0.2
SIX3O95343 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC16.32■□□□□ 0.2
SIX3O95343 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC16.32■□□□□ 0.2
SIX3O95343 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC16.32■□□□□ 0.2
SIX3O95343 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
SIX3O95343 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC16.32■□□□□ 0.2
SIX3O95343 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC16.32■□□□□ 0.2
SIX3O95343 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
SIX3O95343 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC16.32■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 46.6 ms