Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC23.04■■□□□ 1.28
NPHP4O75161 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
NPHP4O75161 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC23.04■■□□□ 1.28
NPHP4O75161 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC23.04■■□□□ 1.28
NPHP4O75161 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC23.04■■□□□ 1.28
NPHP4O75161 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
NPHP4O75161 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC23.04■■□□□ 1.28
NPHP4O75161 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
NPHP4O75161 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC23.04■■□□□ 1.28
NPHP4O75161 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC23.04■■□□□ 1.28
NPHP4O75161 PPP1R14B-202ENST00000392210 600 ntTSL 3 BASIC23.04■■□□□ 1.28
NPHP4O75161 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
NPHP4O75161 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
NPHP4O75161 AC105129.2-201ENST00000559536 390 ntBASIC23.04■■□□□ 1.28
NPHP4O75161 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC23.04■■□□□ 1.28
NPHP4O75161 AC016629.1-201ENST00000596579 586 ntBASIC23.04■■□□□ 1.28
NPHP4O75161 AC243967.2-201ENST00000601409 567 ntTSL 4 BASIC23.04■■□□□ 1.28
NPHP4O75161 Metazoa_SRP.166-201ENST00000612530 253 ntBASIC23.04■■□□□ 1.28
NPHP4O75161 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
NPHP4O75161 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC23.04■■□□□ 1.28
NPHP4O75161 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC23.04■■□□□ 1.28
NPHP4O75161 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC23.04■■□□□ 1.28
NPHP4O75161 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
NPHP4O75161 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
NPHP4O75161 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
NPHP4O75161 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
NPHP4O75161 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
NPHP4O75161 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC23.03■■□□□ 1.28
NPHP4O75161 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC23.03■■□□□ 1.28
NPHP4O75161 THAP4-206ENST00000612200 969 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
NPHP4O75161 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
NPHP4O75161 RHOXF1P1-202ENST00000635473 501 ntBASIC23.03■■□□□ 1.28
NPHP4O75161 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
NPHP4O75161 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
NPHP4O75161 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC23.03■■□□□ 1.28
NPHP4O75161 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC23.03■■□□□ 1.28
NPHP4O75161 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
NPHP4O75161 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
NPHP4O75161 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
NPHP4O75161 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC23.03■■□□□ 1.28
NPHP4O75161 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC23.02■■□□□ 1.28
NPHP4O75161 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC23.02■■□□□ 1.28
NPHP4O75161 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC23.02■■□□□ 1.28
NPHP4O75161 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC23.02■■□□□ 1.28
NPHP4O75161 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
NPHP4O75161 LINC01665-201ENST00000422917 1241 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
NPHP4O75161 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC23.02■■□□□ 1.28
NPHP4O75161 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC23.02■■□□□ 1.28
NPHP4O75161 AC106760.1-201ENST00000508690 800 ntBASIC23.02■■□□□ 1.28
NPHP4O75161 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC23.02■■□□□ 1.28
NPHP4O75161 AL021546.1-201ENST00000551806 552 ntAPPRIS P1 TSL 3 BASIC23.02■■□□□ 1.28
NPHP4O75161 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC23.02■■□□□ 1.28
NPHP4O75161 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
NPHP4O75161 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC23.02■■□□□ 1.28
NPHP4O75161 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC23.02■■□□□ 1.28
NPHP4O75161 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC23.02■■□□□ 1.28
NPHP4O75161 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
NPHP4O75161 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
NPHP4O75161 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
NPHP4O75161 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC23.02■■□□□ 1.27
NPHP4O75161 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.27
NPHP4O75161 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC23.02■■□□□ 1.27
NPHP4O75161 AP003392.4-202ENST00000526453 1359 ntTSL 2 BASIC23.01■■□□□ 1.27
NPHP4O75161 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
NPHP4O75161 RAB4B-201ENST00000357052 1133 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
NPHP4O75161 MIR326-201ENST00000362220 95 ntBASIC23.01■■□□□ 1.27
NPHP4O75161 PSMG3-203ENST00000404674 774 ntAPPRIS P1 TSL 2 BASIC23.01■■□□□ 1.27
NPHP4O75161 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC23.01■■□□□ 1.27
NPHP4O75161 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC23.01■■□□□ 1.27
NPHP4O75161 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC23.01■■□□□ 1.27
NPHP4O75161 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC23.01■■□□□ 1.27
NPHP4O75161 AP001258.2-201ENST00000529891 490 ntBASIC23.01■■□□□ 1.27
NPHP4O75161 RAB40B-202ENST00000538809 704 ntTSL 2 BASIC23.01■■□□□ 1.27
NPHP4O75161 ACTG1P17-201ENST00000558391 1119 ntBASIC23.01■■□□□ 1.27
NPHP4O75161 ATF5-205ENST00000600336 682 ntTSL 2 BASIC23.01■■□□□ 1.27
NPHP4O75161 AC098818.2-201ENST00000564925 2320 ntBASIC23.01■■□□□ 1.27
NPHP4O75161 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
NPHP4O75161 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC23.01■■□□□ 1.27
NPHP4O75161 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC23.01■■□□□ 1.27
NPHP4O75161 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC23.01■■□□□ 1.27
NPHP4O75161 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC23.01■■□□□ 1.27
NPHP4O75161 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
NPHP4O75161 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
NPHP4O75161 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC23.01■■□□□ 1.27
NPHP4O75161 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC23.01■■□□□ 1.27
NPHP4O75161 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
NPHP4O75161 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC23■■□□□ 1.27
NPHP4O75161 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC23■■□□□ 1.27
NPHP4O75161 CYP4F24P-201ENST00000586049 1580 ntBASIC23■■□□□ 1.27
NPHP4O75161 NOSIP-201ENST00000339093 1000 ntAPPRIS ALT1 TSL 5 BASIC23■■□□□ 1.27
NPHP4O75161 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC23■■□□□ 1.27
NPHP4O75161 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC23■■□□□ 1.27
NPHP4O75161 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC23■■□□□ 1.27
NPHP4O75161 TP53AIP1-205ENST00000531399 806 ntAPPRIS P3 TSL 1 (best) BASIC23■■□□□ 1.27
NPHP4O75161 AL022328.3-201ENST00000607943 679 ntBASIC23■■□□□ 1.27
NPHP4O75161 AC008687.7-202ENST00000637404 953 ntBASIC23■■□□□ 1.27
NPHP4O75161 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC23■■□□□ 1.27
NPHP4O75161 AL138781.2-201ENST00000617896 1843 ntBASIC23■■□□□ 1.27
NPHP4O75161 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC23■■□□□ 1.27
NPHP4O75161 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms