Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
HMGB3O15347 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC13.5□□□□□ -0.25
HMGB3O15347 KREMEN1-202ENST00000400335 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
HMGB3O15347 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
HMGB3O15347 SESN3-203ENST00000536441 9558 ntAPPRIS P1 TSL 2 BASIC13.49□□□□□ -0.25
HMGB3O15347 CNP-202ENST00000393892 5217 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
HMGB3O15347 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC13.49□□□□□ -0.25
HMGB3O15347 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC13.49□□□□□ -0.25
HMGB3O15347 FAM46C-201ENST00000369448 5751 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
HMGB3O15347 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
HMGB3O15347 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
HMGB3O15347 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
HMGB3O15347 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC13.49□□□□□ -0.25
HMGB3O15347 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC13.49□□□□□ -0.25
HMGB3O15347 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
HMGB3O15347 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC13.49□□□□□ -0.25
HMGB3O15347 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC13.49□□□□□ -0.25
HMGB3O15347 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC13.49□□□□□ -0.25
HMGB3O15347 AL391256.1-201ENST00000443260 1855 ntBASIC13.49□□□□□ -0.25
HMGB3O15347 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
HMGB3O15347 C11orf87-201ENST00000327419 5884 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
HMGB3O15347 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
HMGB3O15347 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
HMGB3O15347 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
HMGB3O15347 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
HMGB3O15347 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC13.49□□□□□ -0.25
HMGB3O15347 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC13.49□□□□□ -0.25
HMGB3O15347 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC13.49□□□□□ -0.25
HMGB3O15347 PENK-204ENST00000518770 863 ntTSL 2 BASIC13.49□□□□□ -0.25
HMGB3O15347 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC13.49□□□□□ -0.25
HMGB3O15347 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
HMGB3O15347 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC13.49□□□□□ -0.25
HMGB3O15347 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC13.49□□□□□ -0.25
HMGB3O15347 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
HMGB3O15347 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC13.49□□□□□ -0.25
HMGB3O15347 BCORL1-201ENST00000218147 6860 ntAPPRIS P1 TSL 5 BASIC13.49□□□□□ -0.25
HMGB3O15347 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
HMGB3O15347 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
HMGB3O15347 RERE-202ENST00000377464 6733 ntAPPRIS ALT2 TSL 5 BASIC13.49□□□□□ -0.25
HMGB3O15347 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
HMGB3O15347 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
HMGB3O15347 NEK9-201ENST00000238616 8310 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
HMGB3O15347 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
HMGB3O15347 AMER2-201ENST00000357816 10055 ntTSL 2 BASIC13.49□□□□□ -0.25
HMGB3O15347 USP47-202ENST00000339865 7775 ntTSL 2 BASIC13.49□□□□□ -0.25
HMGB3O15347 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
HMGB3O15347 GSG1L-203ENST00000447459 4916 ntAPPRIS P3 TSL 2 BASIC13.49□□□□□ -0.25
HMGB3O15347 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC13.49□□□□□ -0.25
HMGB3O15347 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC13.49□□□□□ -0.25
HMGB3O15347 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC13.49□□□□□ -0.25
HMGB3O15347 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
HMGB3O15347 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC13.48□□□□□ -0.25
HMGB3O15347 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
HMGB3O15347 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
HMGB3O15347 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC13.48□□□□□ -0.25
HMGB3O15347 USP3-204ENST00000540797 5474 ntTSL 2 BASIC13.48□□□□□ -0.25
HMGB3O15347 ROBO1-213ENST00000618846 7483 ntTSL 5 BASIC13.48□□□□□ -0.25
HMGB3O15347 MEG3-213ENST00000455531 4867 ntTSL 2 BASIC13.48□□□□□ -0.25
HMGB3O15347 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
HMGB3O15347 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC13.48□□□□□ -0.25
HMGB3O15347 MYLK-202ENST00000354792 7531 ntAPPRIS ALT2 TSL 5 BASIC13.48□□□□□ -0.25
HMGB3O15347 AC092384.3-202ENST00000564646 2873 ntBASIC13.48□□□□□ -0.25
HMGB3O15347 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC13.48□□□□□ -0.25
HMGB3O15347 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
HMGB3O15347 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC13.48□□□□□ -0.25
HMGB3O15347 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
HMGB3O15347 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
HMGB3O15347 OR2I1P-208ENST00000641137 4948 ntBASIC13.48□□□□□ -0.25
HMGB3O15347 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC13.48□□□□□ -0.25
HMGB3O15347 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
HMGB3O15347 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
HMGB3O15347 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC13.48□□□□□ -0.25
HMGB3O15347 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC13.48□□□□□ -0.25
HMGB3O15347 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
HMGB3O15347 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC13.48□□□□□ -0.25
HMGB3O15347 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC13.48□□□□□ -0.25
HMGB3O15347 AC090192.1-201ENST00000517740 490 ntBASIC13.48□□□□□ -0.25
HMGB3O15347 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
HMGB3O15347 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC13.48□□□□□ -0.25
HMGB3O15347 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC13.48□□□□□ -0.25
HMGB3O15347 NT5C-210ENST00000582160 860 ntTSL 2 BASIC13.48□□□□□ -0.25
HMGB3O15347 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC13.48□□□□□ -0.25
HMGB3O15347 TK1-205ENST00000590862 642 ntTSL 3 BASIC13.48□□□□□ -0.25
HMGB3O15347 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
HMGB3O15347 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
HMGB3O15347 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC13.48□□□□□ -0.25
HMGB3O15347 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC13.48□□□□□ -0.25
HMGB3O15347 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
HMGB3O15347 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
HMGB3O15347 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
HMGB3O15347 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC13.48□□□□□ -0.25
HMGB3O15347 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC13.48□□□□□ -0.25
HMGB3O15347 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC13.48□□□□□ -0.25
HMGB3O15347 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
HMGB3O15347 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC13.48□□□□□ -0.25
HMGB3O15347 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
HMGB3O15347 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
HMGB3O15347 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC13.48□□□□□ -0.25
HMGB3O15347 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC13.48□□□□□ -0.25
HMGB3O15347 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 64.1 ms