Protein–RNA interactions for Protein: O14562

UBFD1, Ubiquitin domain-containing protein UBFD1, humanhuman

Known RBP Predictions only

Length 309 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBFD1O14562 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
UBFD1O14562 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
UBFD1O14562 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC16.22■□□□□ 0.19
UBFD1O14562 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC16.22■□□□□ 0.19
UBFD1O14562 REXO1L8P-201ENST00000604378 1897 ntBASIC16.22■□□□□ 0.19
UBFD1O14562 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
UBFD1O14562 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
UBFD1O14562 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC16.22■□□□□ 0.19
UBFD1O14562 SP100-205ENST00000409824 1802 ntTSL 5 BASIC16.22■□□□□ 0.19
UBFD1O14562 SUPT20HL2-201ENST00000486479 2409 ntBASIC16.21■□□□□ 0.19
UBFD1O14562 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC16.21■□□□□ 0.19
UBFD1O14562 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
UBFD1O14562 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
UBFD1O14562 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
UBFD1O14562 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
UBFD1O14562 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
UBFD1O14562 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
UBFD1O14562 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.19
UBFD1O14562 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC16.21■□□□□ 0.19
UBFD1O14562 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
UBFD1O14562 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC16.21■□□□□ 0.19
UBFD1O14562 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
UBFD1O14562 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
UBFD1O14562 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
UBFD1O14562 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
UBFD1O14562 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
UBFD1O14562 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
UBFD1O14562 HCG4P8-203ENST00000443049 980 ntBASIC16.21■□□□□ 0.19
UBFD1O14562 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC16.21■□□□□ 0.19
UBFD1O14562 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC16.21■□□□□ 0.19
UBFD1O14562 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC16.21■□□□□ 0.19
UBFD1O14562 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC16.21■□□□□ 0.19
UBFD1O14562 TBCB-205ENST00000585746 875 ntTSL 3 BASIC16.21■□□□□ 0.19
UBFD1O14562 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC16.21■□□□□ 0.19
UBFD1O14562 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC16.21■□□□□ 0.19
UBFD1O14562 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC16.21■□□□□ 0.19
UBFD1O14562 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
UBFD1O14562 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
UBFD1O14562 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
UBFD1O14562 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
UBFD1O14562 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC16.21■□□□□ 0.19
UBFD1O14562 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC16.21■□□□□ 0.18
UBFD1O14562 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.18
UBFD1O14562 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.18
UBFD1O14562 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.18
UBFD1O14562 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC16.21■□□□□ 0.18
UBFD1O14562 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC16.21■□□□□ 0.18
UBFD1O14562 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
UBFD1O14562 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC16.2■□□□□ 0.18
UBFD1O14562 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
UBFD1O14562 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
UBFD1O14562 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
UBFD1O14562 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
UBFD1O14562 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
UBFD1O14562 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
UBFD1O14562 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
UBFD1O14562 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC16.2■□□□□ 0.18
UBFD1O14562 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC16.2■□□□□ 0.18
UBFD1O14562 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC16.2■□□□□ 0.18
UBFD1O14562 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
UBFD1O14562 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC16.2■□□□□ 0.18
UBFD1O14562 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC16.2■□□□□ 0.18
UBFD1O14562 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC16.2■□□□□ 0.18
UBFD1O14562 AF238378.1-201ENST00000526806 358 ntBASIC16.2■□□□□ 0.18
UBFD1O14562 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC16.2■□□□□ 0.18
UBFD1O14562 AC091304.2-201ENST00000564639 760 ntBASIC16.2■□□□□ 0.18
UBFD1O14562 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC16.2■□□□□ 0.18
UBFD1O14562 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
UBFD1O14562 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
UBFD1O14562 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC16.2■□□□□ 0.18
UBFD1O14562 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
UBFD1O14562 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC16.2■□□□□ 0.18
UBFD1O14562 PCGF3-213ENST00000620529 1899 ntBASIC16.2■□□□□ 0.18
UBFD1O14562 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC16.2■□□□□ 0.18
UBFD1O14562 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
UBFD1O14562 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC16.2■□□□□ 0.18
UBFD1O14562 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC16.2■□□□□ 0.18
UBFD1O14562 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC16.19■□□□□ 0.18
UBFD1O14562 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
UBFD1O14562 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC16.19■□□□□ 0.18
UBFD1O14562 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
UBFD1O14562 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
UBFD1O14562 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
UBFD1O14562 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
UBFD1O14562 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
UBFD1O14562 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
UBFD1O14562 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
UBFD1O14562 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC16.19■□□□□ 0.18
UBFD1O14562 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC16.19■□□□□ 0.18
UBFD1O14562 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC16.19■□□□□ 0.18
UBFD1O14562 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
UBFD1O14562 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC16.19■□□□□ 0.18
UBFD1O14562 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC16.19■□□□□ 0.18
UBFD1O14562 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
UBFD1O14562 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC16.19■□□□□ 0.18
UBFD1O14562 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC16.19■□□□□ 0.18
UBFD1O14562 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
UBFD1O14562 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC16.19■□□□□ 0.18
UBFD1O14562 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
UBFD1O14562 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms