Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 AL031848.2-201ENST00000607670 837 ntBASIC21.33■■□□□ 1.01
CLCF1Q9UBD9 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
CLCF1Q9UBD9 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
CLCF1Q9UBD9 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC21.33■■□□□ 1
CLCF1Q9UBD9 PKM-203ENST00000389093 2279 ntTSL 5 BASIC21.32■■□□□ 1
CLCF1Q9UBD9 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC21.32■■□□□ 1
CLCF1Q9UBD9 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
CLCF1Q9UBD9 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC21.32■■□□□ 1
CLCF1Q9UBD9 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC21.32■■□□□ 1
CLCF1Q9UBD9 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC21.32■■□□□ 1
CLCF1Q9UBD9 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC21.32■■□□□ 1
CLCF1Q9UBD9 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CLCF1Q9UBD9 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CLCF1Q9UBD9 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
CLCF1Q9UBD9 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC21.31■■□□□ 1
CLCF1Q9UBD9 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CLCF1Q9UBD9 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CLCF1Q9UBD9 AC022616.5-201ENST00000518796 181 ntBASIC21.31■■□□□ 1
CLCF1Q9UBD9 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC21.31■■□□□ 1
CLCF1Q9UBD9 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CLCF1Q9UBD9 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
CLCF1Q9UBD9 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC21.31■■□□□ 1
CLCF1Q9UBD9 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CLCF1Q9UBD9 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC21.3■■□□□ 1
CLCF1Q9UBD9 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC21.3■■□□□ 1
CLCF1Q9UBD9 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC21.3■■□□□ 1
CLCF1Q9UBD9 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
CLCF1Q9UBD9 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
CLCF1Q9UBD9 SNAI3-AS1-204ENST00000567997 2048 ntBASIC21.29■■□□□ 1
CLCF1Q9UBD9 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CLCF1Q9UBD9 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC21.29■■□□□ 1
CLCF1Q9UBD9 PRTG-204ENST00000561292 833 ntTSL 3 BASIC21.29■■□□□ 1
CLCF1Q9UBD9 TRIR-205ENST00000592273 783 ntTSL 3 BASIC21.29■■□□□ 1
CLCF1Q9UBD9 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CLCF1Q9UBD9 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
CLCF1Q9UBD9 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CLCF1Q9UBD9 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC21.28■■□□□ 1
CLCF1Q9UBD9 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CLCF1Q9UBD9 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC21.28■■□□□ 1
CLCF1Q9UBD9 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC21.28■■□□□ 1
CLCF1Q9UBD9 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CLCF1Q9UBD9 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
CLCF1Q9UBD9 AL121749.1-202ENST00000609313 2153 ntBASIC21.27■■□□□ 1
CLCF1Q9UBD9 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC21.27■■□□□ 1
CLCF1Q9UBD9 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC21.27■■□□□ 1
CLCF1Q9UBD9 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
CLCF1Q9UBD9 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC21.26■□□□□ 0.99
CLCF1Q9UBD9 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CLCF1Q9UBD9 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
CLCF1Q9UBD9 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CLCF1Q9UBD9 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
CLCF1Q9UBD9 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CLCF1Q9UBD9 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC21.25■□□□□ 0.99
CLCF1Q9UBD9 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CLCF1Q9UBD9 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CLCF1Q9UBD9 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CLCF1Q9UBD9 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC21.25■□□□□ 0.99
CLCF1Q9UBD9 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
CLCF1Q9UBD9 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC21.25■□□□□ 0.99
CLCF1Q9UBD9 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC21.24■□□□□ 0.99
CLCF1Q9UBD9 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC21.24■□□□□ 0.99
CLCF1Q9UBD9 TK2-216ENST00000564917 1156 ntTSL 3 BASIC21.24■□□□□ 0.99
CLCF1Q9UBD9 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
CLCF1Q9UBD9 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
CLCF1Q9UBD9 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
CLCF1Q9UBD9 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC21.24■□□□□ 0.99
CLCF1Q9UBD9 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CLCF1Q9UBD9 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
CLCF1Q9UBD9 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC21.23■□□□□ 0.99
CLCF1Q9UBD9 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
CLCF1Q9UBD9 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC21.23■□□□□ 0.99
CLCF1Q9UBD9 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
CLCF1Q9UBD9 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC21.22■□□□□ 0.99
CLCF1Q9UBD9 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC21.22■□□□□ 0.99
CLCF1Q9UBD9 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
CLCF1Q9UBD9 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
CLCF1Q9UBD9 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
CLCF1Q9UBD9 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CLCF1Q9UBD9 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC21.21■□□□□ 0.99
CLCF1Q9UBD9 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CLCF1Q9UBD9 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CLCF1Q9UBD9 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
CLCF1Q9UBD9 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CLCF1Q9UBD9 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
CLCF1Q9UBD9 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC21.21■□□□□ 0.99
CLCF1Q9UBD9 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CLCF1Q9UBD9 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
CLCF1Q9UBD9 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
CLCF1Q9UBD9 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
CLCF1Q9UBD9 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
CLCF1Q9UBD9 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC21.21■□□□□ 0.99
CLCF1Q9UBD9 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC21.21■□□□□ 0.99
CLCF1Q9UBD9 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC21.2■□□□□ 0.99
CLCF1Q9UBD9 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CLCF1Q9UBD9 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC21.2■□□□□ 0.98
CLCF1Q9UBD9 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
CLCF1Q9UBD9 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CLCF1Q9UBD9 KRT18P24-201ENST00000344739 1156 ntBASIC21.2■□□□□ 0.98
CLCF1Q9UBD9 AL592295.1-201ENST00000400984 884 ntBASIC21.2■□□□□ 0.98
CLCF1Q9UBD9 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC21.2■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 13.7 ms