Protein–RNA interactions for Protein: Q9H9S3

SEC61A2, Protein transport protein Sec61 subunit alpha isoform 2, humanhuman

Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEC61A2Q9H9S3 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC21.28■■□□□ 1
SEC61A2Q9H9S3 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
SEC61A2Q9H9S3 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
SEC61A2Q9H9S3 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC21.28■■□□□ 1
SEC61A2Q9H9S3 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC21.28■■□□□ 1
SEC61A2Q9H9S3 AC096887.2-201ENST00000623443 1957 ntBASIC21.28■■□□□ 1
SEC61A2Q9H9S3 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC21.28■■□□□ 1
SEC61A2Q9H9S3 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
SEC61A2Q9H9S3 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
SEC61A2Q9H9S3 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC21.27■■□□□ 1
SEC61A2Q9H9S3 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC21.27■■□□□ 1
SEC61A2Q9H9S3 RP9P-202ENST00000450133 1212 ntBASIC21.27■■□□□ 1
SEC61A2Q9H9S3 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC21.27■■□□□ 1
SEC61A2Q9H9S3 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC21.26■□□□□ 0.99
SEC61A2Q9H9S3 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
SEC61A2Q9H9S3 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
SEC61A2Q9H9S3 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
SEC61A2Q9H9S3 AC093536.1-201ENST00000569153 554 ntBASIC21.26■□□□□ 0.99
SEC61A2Q9H9S3 NTF6A-201ENST00000591175 560 ntBASIC21.26■□□□□ 0.99
SEC61A2Q9H9S3 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
SEC61A2Q9H9S3 AC009831.1-201ENST00000580420 1582 ntBASIC21.26■□□□□ 0.99
SEC61A2Q9H9S3 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC21.26■□□□□ 0.99
SEC61A2Q9H9S3 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC21.26■□□□□ 0.99
SEC61A2Q9H9S3 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SEC61A2Q9H9S3 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SEC61A2Q9H9S3 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC21.25■□□□□ 0.99
SEC61A2Q9H9S3 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
SEC61A2Q9H9S3 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC21.24■□□□□ 0.99
SEC61A2Q9H9S3 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
SEC61A2Q9H9S3 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC21.24■□□□□ 0.99
SEC61A2Q9H9S3 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
SEC61A2Q9H9S3 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
SEC61A2Q9H9S3 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
SEC61A2Q9H9S3 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC21.24■□□□□ 0.99
SEC61A2Q9H9S3 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC21.23■□□□□ 0.99
SEC61A2Q9H9S3 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
SEC61A2Q9H9S3 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC21.23■□□□□ 0.99
SEC61A2Q9H9S3 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
SEC61A2Q9H9S3 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC21.23■□□□□ 0.99
SEC61A2Q9H9S3 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC21.23■□□□□ 0.99
SEC61A2Q9H9S3 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
SEC61A2Q9H9S3 AC026202.3-201ENST00000600805 1127 ntBASIC21.23■□□□□ 0.99
SEC61A2Q9H9S3 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
SEC61A2Q9H9S3 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
SEC61A2Q9H9S3 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
SEC61A2Q9H9S3 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC21.22■□□□□ 0.99
SEC61A2Q9H9S3 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC21.22■□□□□ 0.99
SEC61A2Q9H9S3 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SEC61A2Q9H9S3 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SEC61A2Q9H9S3 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
SEC61A2Q9H9S3 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
SEC61A2Q9H9S3 KRT18P60-201ENST00000312876 1297 ntBASIC21.21■□□□□ 0.99
SEC61A2Q9H9S3 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
SEC61A2Q9H9S3 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
SEC61A2Q9H9S3 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
SEC61A2Q9H9S3 AC133552.2-201ENST00000619106 1032 ntBASIC21.21■□□□□ 0.99
SEC61A2Q9H9S3 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC21.21■□□□□ 0.99
SEC61A2Q9H9S3 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SEC61A2Q9H9S3 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
SEC61A2Q9H9S3 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.99
SEC61A2Q9H9S3 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
SEC61A2Q9H9S3 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
SEC61A2Q9H9S3 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
SEC61A2Q9H9S3 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
SEC61A2Q9H9S3 AL592293.1-201ENST00000502889 1188 ntBASIC21.2■□□□□ 0.98
SEC61A2Q9H9S3 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
SEC61A2Q9H9S3 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
SEC61A2Q9H9S3 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC21.2■□□□□ 0.98
SEC61A2Q9H9S3 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
SEC61A2Q9H9S3 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SEC61A2Q9H9S3 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC21.2■□□□□ 0.98
SEC61A2Q9H9S3 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
SEC61A2Q9H9S3 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SEC61A2Q9H9S3 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
SEC61A2Q9H9S3 CEBPA-AS1-201ENST00000592982 2198 ntBASIC21.19■□□□□ 0.98
SEC61A2Q9H9S3 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
SEC61A2Q9H9S3 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC21.19■□□□□ 0.98
SEC61A2Q9H9S3 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SEC61A2Q9H9S3 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
SEC61A2Q9H9S3 GFER-205ENST00000569451 517 ntTSL 5 BASIC21.19■□□□□ 0.98
SEC61A2Q9H9S3 RAP2CP1-202ENST00000605179 643 ntBASIC21.19■□□□□ 0.98
SEC61A2Q9H9S3 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SEC61A2Q9H9S3 PKM-204ENST00000449901 2526 ntTSL 2 BASIC21.19■□□□□ 0.98
SEC61A2Q9H9S3 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SEC61A2Q9H9S3 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SEC61A2Q9H9S3 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
SEC61A2Q9H9S3 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC21.18■□□□□ 0.98
SEC61A2Q9H9S3 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC21.18■□□□□ 0.98
SEC61A2Q9H9S3 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SEC61A2Q9H9S3 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC21.17■□□□□ 0.98
SEC61A2Q9H9S3 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC21.17■□□□□ 0.98
SEC61A2Q9H9S3 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
SEC61A2Q9H9S3 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SEC61A2Q9H9S3 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
SEC61A2Q9H9S3 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC21.16■□□□□ 0.98
SEC61A2Q9H9S3 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
SEC61A2Q9H9S3 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SEC61A2Q9H9S3 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
SEC61A2Q9H9S3 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
SEC61A2Q9H9S3 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms