Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
MMP28Q9H239 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
MMP28Q9H239 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC20.87■□□□□ 0.93
MMP28Q9H239 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
MMP28Q9H239 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC20.87■□□□□ 0.93
MMP28Q9H239 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
MMP28Q9H239 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
MMP28Q9H239 AC097639.1-201ENST00000565519 1891 ntBASIC20.87■□□□□ 0.93
MMP28Q9H239 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC20.87■□□□□ 0.93
MMP28Q9H239 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
MMP28Q9H239 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
MMP28Q9H239 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
MMP28Q9H239 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
MMP28Q9H239 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
MMP28Q9H239 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
MMP28Q9H239 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
MMP28Q9H239 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
MMP28Q9H239 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
MMP28Q9H239 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC20.86■□□□□ 0.93
MMP28Q9H239 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
MMP28Q9H239 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC20.85■□□□□ 0.93
MMP28Q9H239 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
MMP28Q9H239 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC20.85■□□□□ 0.93
MMP28Q9H239 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
MMP28Q9H239 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
MMP28Q9H239 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
MMP28Q9H239 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
MMP28Q9H239 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
MMP28Q9H239 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC20.84■□□□□ 0.93
MMP28Q9H239 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC20.84■□□□□ 0.93
MMP28Q9H239 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
MMP28Q9H239 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC20.84■□□□□ 0.93
MMP28Q9H239 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
MMP28Q9H239 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
MMP28Q9H239 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC20.83■□□□□ 0.93
MMP28Q9H239 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC20.83■□□□□ 0.93
MMP28Q9H239 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
MMP28Q9H239 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
MMP28Q9H239 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
MMP28Q9H239 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
MMP28Q9H239 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.92
MMP28Q9H239 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.92
MMP28Q9H239 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC20.83■□□□□ 0.92
MMP28Q9H239 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC20.83■□□□□ 0.92
MMP28Q9H239 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC20.82■□□□□ 0.92
MMP28Q9H239 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
MMP28Q9H239 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC20.82■□□□□ 0.92
MMP28Q9H239 AC142472.1-201ENST00000612013 1741 ntBASIC20.82■□□□□ 0.92
MMP28Q9H239 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC20.82■□□□□ 0.92
MMP28Q9H239 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
MMP28Q9H239 WHAMMP3-201ENST00000611636 1609 ntBASIC20.82■□□□□ 0.92
MMP28Q9H239 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
MMP28Q9H239 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
MMP28Q9H239 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
MMP28Q9H239 ME2-208ENST00000638937 2471 ntTSL 5 BASIC20.81■□□□□ 0.92
MMP28Q9H239 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
MMP28Q9H239 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
MMP28Q9H239 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC20.8■□□□□ 0.92
MMP28Q9H239 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC20.8■□□□□ 0.92
MMP28Q9H239 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
MMP28Q9H239 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
MMP28Q9H239 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
MMP28Q9H239 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC20.79■□□□□ 0.92
MMP28Q9H239 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
MMP28Q9H239 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
MMP28Q9H239 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
MMP28Q9H239 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
MMP28Q9H239 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
MMP28Q9H239 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC20.79■□□□□ 0.92
MMP28Q9H239 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
MMP28Q9H239 DUSP8P5-201ENST00000422884 1815 ntBASIC20.78■□□□□ 0.92
MMP28Q9H239 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
MMP28Q9H239 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
MMP28Q9H239 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC20.78■□□□□ 0.92
MMP28Q9H239 LINC01971-201ENST00000617888 1048 ntBASIC20.78■□□□□ 0.92
MMP28Q9H239 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
MMP28Q9H239 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
MMP28Q9H239 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
MMP28Q9H239 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
MMP28Q9H239 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
MMP28Q9H239 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC20.77■□□□□ 0.92
MMP28Q9H239 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC20.77■□□□□ 0.92
MMP28Q9H239 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC20.77■□□□□ 0.92
MMP28Q9H239 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC20.77■□□□□ 0.92
MMP28Q9H239 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
MMP28Q9H239 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
MMP28Q9H239 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.91
MMP28Q9H239 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
MMP28Q9H239 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
MMP28Q9H239 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
MMP28Q9H239 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
MMP28Q9H239 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
MMP28Q9H239 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
MMP28Q9H239 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
MMP28Q9H239 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC20.76■□□□□ 0.91
MMP28Q9H239 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
MMP28Q9H239 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC20.76■□□□□ 0.91
MMP28Q9H239 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
MMP28Q9H239 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
MMP28Q9H239 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC20.75■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 125.2 ms