Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC26.23■■□□□ 1.79
LRCH3Q96II8 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
LRCH3Q96II8 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC26.22■■□□□ 1.79
LRCH3Q96II8 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC26.22■■□□□ 1.79
LRCH3Q96II8 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC26.22■■□□□ 1.79
LRCH3Q96II8 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC26.21■■□□□ 1.79
LRCH3Q96II8 AL136162.1-201ENST00000607711 1078 ntBASIC26.21■■□□□ 1.79
LRCH3Q96II8 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC26.2■■□□□ 1.79
LRCH3Q96II8 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC26.2■■□□□ 1.79
LRCH3Q96II8 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC26.2■■□□□ 1.79
LRCH3Q96II8 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC26.2■■□□□ 1.79
LRCH3Q96II8 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC26.2■■□□□ 1.78
LRCH3Q96II8 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC26.2■■□□□ 1.78
LRCH3Q96II8 PLD4-205ENST00000553861 667 ntTSL 2 BASIC26.2■■□□□ 1.78
LRCH3Q96II8 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC26.2■■□□□ 1.78
LRCH3Q96II8 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
LRCH3Q96II8 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC26.19■■□□□ 1.78
LRCH3Q96II8 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC26.19■■□□□ 1.78
LRCH3Q96II8 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC26.19■■□□□ 1.78
LRCH3Q96II8 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
LRCH3Q96II8 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
LRCH3Q96II8 WHAMMP3-201ENST00000611636 1609 ntBASIC26.18■■□□□ 1.78
LRCH3Q96II8 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
LRCH3Q96II8 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
LRCH3Q96II8 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
LRCH3Q96II8 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC26.18■■□□□ 1.78
LRCH3Q96II8 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC26.18■■□□□ 1.78
LRCH3Q96II8 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC26.18■■□□□ 1.78
LRCH3Q96II8 EXOG-217ENST00000630638 197 ntTSL 5 BASIC26.18■■□□□ 1.78
LRCH3Q96II8 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC26.18■■□□□ 1.78
LRCH3Q96II8 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC26.17■■□□□ 1.78
LRCH3Q96II8 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
LRCH3Q96II8 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC26.16■■□□□ 1.78
LRCH3Q96II8 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC26.16■■□□□ 1.78
LRCH3Q96II8 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC26.16■■□□□ 1.78
LRCH3Q96II8 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
LRCH3Q96II8 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
LRCH3Q96II8 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC26.16■■□□□ 1.78
LRCH3Q96II8 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
LRCH3Q96II8 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC26.16■■□□□ 1.78
LRCH3Q96II8 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
LRCH3Q96II8 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
LRCH3Q96II8 AL355001.2-201ENST00000620617 1191 ntBASIC26.15■■□□□ 1.78
LRCH3Q96II8 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC26.15■■□□□ 1.78
LRCH3Q96II8 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
LRCH3Q96II8 ABCB10P3-201ENST00000561950 2166 ntBASIC26.14■■□□□ 1.78
LRCH3Q96II8 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC26.14■■□□□ 1.78
LRCH3Q96II8 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC26.14■■□□□ 1.78
LRCH3Q96II8 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC26.14■■□□□ 1.78
LRCH3Q96II8 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC26.14■■□□□ 1.78
LRCH3Q96II8 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC26.14■■□□□ 1.77
LRCH3Q96II8 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
LRCH3Q96II8 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC26.13■■□□□ 1.77
LRCH3Q96II8 EDA-201ENST00000338901 1233 ntBASIC26.13■■□□□ 1.77
LRCH3Q96II8 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC26.13■■□□□ 1.77
LRCH3Q96II8 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
LRCH3Q96II8 RBM38-205ENST00000440234 686 ntTSL 2 BASIC26.12■■□□□ 1.77
LRCH3Q96II8 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC26.12■■□□□ 1.77
LRCH3Q96II8 STOX2-205ENST00000513034 807 ntTSL 3 BASIC26.12■■□□□ 1.77
LRCH3Q96II8 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
LRCH3Q96II8 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC26.12■■□□□ 1.77
LRCH3Q96II8 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
LRCH3Q96II8 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC26.12■■□□□ 1.77
LRCH3Q96II8 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
LRCH3Q96II8 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC26.12■■□□□ 1.77
LRCH3Q96II8 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC26.11■■□□□ 1.77
LRCH3Q96II8 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC26.11■■□□□ 1.77
LRCH3Q96II8 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC26.11■■□□□ 1.77
LRCH3Q96II8 MIR4281-201ENST00000580852 62 ntBASIC26.11■■□□□ 1.77
LRCH3Q96II8 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
LRCH3Q96II8 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC26.11■■□□□ 1.77
LRCH3Q96II8 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC26.11■■□□□ 1.77
LRCH3Q96II8 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC26.1■■□□□ 1.77
LRCH3Q96II8 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
LRCH3Q96II8 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
LRCH3Q96II8 SENP5-202ENST00000419026 973 ntTSL 3 BASIC26.1■■□□□ 1.77
LRCH3Q96II8 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC26.1■■□□□ 1.77
LRCH3Q96II8 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC26.1■■□□□ 1.77
LRCH3Q96II8 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC26.09■■□□□ 1.77
LRCH3Q96II8 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC26.09■■□□□ 1.77
LRCH3Q96II8 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC26.09■■□□□ 1.77
LRCH3Q96II8 DENND3-207ENST00000518347 850 ntTSL 2 BASIC26.09■■□□□ 1.77
LRCH3Q96II8 AC024257.2-201ENST00000549699 147 ntBASIC26.09■■□□□ 1.77
LRCH3Q96II8 AL136967.2-201ENST00000623968 743 ntBASIC26.09■■□□□ 1.77
LRCH3Q96II8 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC26.09■■□□□ 1.77
LRCH3Q96II8 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC26.08■■□□□ 1.77
LRCH3Q96II8 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC26.08■■□□□ 1.77
LRCH3Q96II8 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC26.08■■□□□ 1.77
LRCH3Q96II8 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
LRCH3Q96II8 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC26.07■■□□□ 1.76
LRCH3Q96II8 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC26.07■■□□□ 1.76
LRCH3Q96II8 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC26.07■■□□□ 1.76
LRCH3Q96II8 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC26.07■■□□□ 1.76
LRCH3Q96II8 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
LRCH3Q96II8 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC26.06■■□□□ 1.76
LRCH3Q96II8 AF213884.3-201ENST00000563833 479 ntBASIC26.06■■□□□ 1.76
LRCH3Q96II8 IKBKGP1-201ENST00000612193 1073 ntBASIC26.06■■□□□ 1.76
LRCH3Q96II8 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC26.06■■□□□ 1.76
LRCH3Q96II8 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
LRCH3Q96II8 SHF-206ENST00000560471 2499 ntTSL 5 BASIC26.06■■□□□ 1.76
Retrieved 100 of 98,524 protein–RNA pairs in 12.6 ms