Protein–RNA interactions for Protein: Q8WU17

RNF139, E3 ubiquitin-protein ligase RNF139, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF139Q8WU17 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC25.09■■□□□ 1.61
RNF139Q8WU17 SHF-207ENST00000560540 2062 ntTSL 5 BASIC25.09■■□□□ 1.61
RNF139Q8WU17 ERN1-208ENST00000606895 2068 ntBASIC25.09■■□□□ 1.61
RNF139Q8WU17 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC25.09■■□□□ 1.61
RNF139Q8WU17 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
RNF139Q8WU17 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
RNF139Q8WU17 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC25.08■■□□□ 1.61
RNF139Q8WU17 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC25.08■■□□□ 1.61
RNF139Q8WU17 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC25.08■■□□□ 1.61
RNF139Q8WU17 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC25.08■■□□□ 1.61
RNF139Q8WU17 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
RNF139Q8WU17 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC25.08■■□□□ 1.6
RNF139Q8WU17 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC25.08■■□□□ 1.6
RNF139Q8WU17 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC25.08■■□□□ 1.6
RNF139Q8WU17 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
RNF139Q8WU17 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
RNF139Q8WU17 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC25.07■■□□□ 1.6
RNF139Q8WU17 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
RNF139Q8WU17 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
RNF139Q8WU17 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC25.07■■□□□ 1.6
RNF139Q8WU17 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC25.07■■□□□ 1.6
RNF139Q8WU17 RPS2P7-201ENST00000447334 885 ntBASIC25.06■■□□□ 1.6
RNF139Q8WU17 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC25.06■■□□□ 1.6
RNF139Q8WU17 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
RNF139Q8WU17 AC074183.2-201ENST00000623112 922 ntBASIC25.06■■□□□ 1.6
RNF139Q8WU17 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC25.06■■□□□ 1.6
RNF139Q8WU17 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
RNF139Q8WU17 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
RNF139Q8WU17 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC25.05■■□□□ 1.6
RNF139Q8WU17 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
RNF139Q8WU17 AC087393.1-201ENST00000582896 145 ntBASIC25.04■■□□□ 1.6
RNF139Q8WU17 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC25.04■■□□□ 1.6
RNF139Q8WU17 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
RNF139Q8WU17 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
RNF139Q8WU17 AC010501.1-201ENST00000606270 1962 ntBASIC25.04■■□□□ 1.6
RNF139Q8WU17 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC25.03■■□□□ 1.6
RNF139Q8WU17 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC25.03■■□□□ 1.6
RNF139Q8WU17 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC25.03■■□□□ 1.6
RNF139Q8WU17 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC25.03■■□□□ 1.6
RNF139Q8WU17 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
RNF139Q8WU17 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
RNF139Q8WU17 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC25.03■■□□□ 1.6
RNF139Q8WU17 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
RNF139Q8WU17 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC25.03■■□□□ 1.6
RNF139Q8WU17 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
RNF139Q8WU17 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC25.02■■□□□ 1.6
RNF139Q8WU17 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC25.02■■□□□ 1.6
RNF139Q8WU17 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
RNF139Q8WU17 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC25.02■■□□□ 1.6
RNF139Q8WU17 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.6
RNF139Q8WU17 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC25.01■■□□□ 1.59
RNF139Q8WU17 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC25.01■■□□□ 1.59
RNF139Q8WU17 AC010980.1-201ENST00000587192 1142 ntBASIC25.01■■□□□ 1.59
RNF139Q8WU17 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC25.01■■□□□ 1.59
RNF139Q8WU17 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC25.01■■□□□ 1.59
RNF139Q8WU17 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC25■■□□□ 1.59
RNF139Q8WU17 SNAI3-AS1-204ENST00000567997 2048 ntBASIC25■■□□□ 1.59
RNF139Q8WU17 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC25■■□□□ 1.59
RNF139Q8WU17 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
RNF139Q8WU17 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC25■■□□□ 1.59
RNF139Q8WU17 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC24.98■■□□□ 1.59
RNF139Q8WU17 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
RNF139Q8WU17 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC24.98■■□□□ 1.59
RNF139Q8WU17 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
RNF139Q8WU17 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC24.98■■□□□ 1.59
RNF139Q8WU17 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
RNF139Q8WU17 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC24.97■■□□□ 1.59
RNF139Q8WU17 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC24.97■■□□□ 1.59
RNF139Q8WU17 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC24.97■■□□□ 1.59
RNF139Q8WU17 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC24.97■■□□□ 1.59
RNF139Q8WU17 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
RNF139Q8WU17 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC24.96■■□□□ 1.59
RNF139Q8WU17 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
RNF139Q8WU17 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC24.96■■□□□ 1.59
RNF139Q8WU17 MTX2-204ENST00000443241 799 ntTSL 3 BASIC24.96■■□□□ 1.59
RNF139Q8WU17 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC24.96■■□□□ 1.59
RNF139Q8WU17 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC24.96■■□□□ 1.59
RNF139Q8WU17 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC24.96■■□□□ 1.59
RNF139Q8WU17 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC24.96■■□□□ 1.59
RNF139Q8WU17 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC24.96■■□□□ 1.59
RNF139Q8WU17 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
RNF139Q8WU17 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC24.95■■□□□ 1.59
RNF139Q8WU17 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC24.95■■□□□ 1.59
RNF139Q8WU17 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.58
RNF139Q8WU17 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC24.95■■□□□ 1.58
RNF139Q8WU17 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC24.95■■□□□ 1.58
RNF139Q8WU17 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC24.95■■□□□ 1.58
RNF139Q8WU17 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC24.95■■□□□ 1.58
RNF139Q8WU17 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC24.95■■□□□ 1.58
RNF139Q8WU17 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC24.95■■□□□ 1.58
RNF139Q8WU17 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC24.95■■□□□ 1.58
RNF139Q8WU17 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC24.95■■□□□ 1.58
RNF139Q8WU17 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC24.95■■□□□ 1.58
RNF139Q8WU17 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC24.95■■□□□ 1.58
RNF139Q8WU17 AC096887.2-201ENST00000623443 1957 ntBASIC24.94■■□□□ 1.58
RNF139Q8WU17 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC24.94■■□□□ 1.58
RNF139Q8WU17 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC24.94■■□□□ 1.58
RNF139Q8WU17 BEX3-202ENST00000372634 753 ntTSL 2 BASIC24.94■■□□□ 1.58
RNF139Q8WU17 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC24.94■■□□□ 1.58
RNF139Q8WU17 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
Retrieved 100 of 98,524 protein–RNA pairs in 12.9 ms