Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC22■■□□□ 1.11
DEPDC4Q8N2C3 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC22■■□□□ 1.11
DEPDC4Q8N2C3 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC21.99■■□□□ 1.11
DEPDC4Q8N2C3 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
DEPDC4Q8N2C3 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC21.99■■□□□ 1.11
DEPDC4Q8N2C3 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
DEPDC4Q8N2C3 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
DEPDC4Q8N2C3 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
DEPDC4Q8N2C3 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC21.99■■□□□ 1.11
DEPDC4Q8N2C3 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC21.99■■□□□ 1.11
DEPDC4Q8N2C3 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
DEPDC4Q8N2C3 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC21.98■■□□□ 1.11
DEPDC4Q8N2C3 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC21.98■■□□□ 1.11
DEPDC4Q8N2C3 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
DEPDC4Q8N2C3 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC21.98■■□□□ 1.11
DEPDC4Q8N2C3 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC21.98■■□□□ 1.11
DEPDC4Q8N2C3 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
DEPDC4Q8N2C3 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
DEPDC4Q8N2C3 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC21.98■■□□□ 1.11
DEPDC4Q8N2C3 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
DEPDC4Q8N2C3 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC21.97■■□□□ 1.11
DEPDC4Q8N2C3 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
DEPDC4Q8N2C3 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
DEPDC4Q8N2C3 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
DEPDC4Q8N2C3 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC21.97■■□□□ 1.11
DEPDC4Q8N2C3 SRP68-213ENST00000629930 165 ntTSL 5 BASIC21.97■■□□□ 1.11
DEPDC4Q8N2C3 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
DEPDC4Q8N2C3 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
DEPDC4Q8N2C3 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
DEPDC4Q8N2C3 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC21.96■■□□□ 1.11
DEPDC4Q8N2C3 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
DEPDC4Q8N2C3 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC21.96■■□□□ 1.11
DEPDC4Q8N2C3 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC21.96■■□□□ 1.11
DEPDC4Q8N2C3 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC21.96■■□□□ 1.11
DEPDC4Q8N2C3 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
DEPDC4Q8N2C3 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC21.96■■□□□ 1.11
DEPDC4Q8N2C3 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC21.96■■□□□ 1.11
DEPDC4Q8N2C3 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC21.96■■□□□ 1.11
DEPDC4Q8N2C3 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC21.95■■□□□ 1.1
DEPDC4Q8N2C3 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
DEPDC4Q8N2C3 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC21.95■■□□□ 1.1
DEPDC4Q8N2C3 CEP120-209ENST00000515110 606 ntTSL 3 BASIC21.95■■□□□ 1.1
DEPDC4Q8N2C3 RPS2-210ENST00000530225 765 ntTSL 2 BASIC21.95■■□□□ 1.1
DEPDC4Q8N2C3 CHST11-203ENST00000547956 936 ntTSL 2 BASIC21.95■■□□□ 1.1
DEPDC4Q8N2C3 AC096887.2-201ENST00000623443 1957 ntBASIC21.95■■□□□ 1.1
DEPDC4Q8N2C3 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
DEPDC4Q8N2C3 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
DEPDC4Q8N2C3 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC21.95■■□□□ 1.1
DEPDC4Q8N2C3 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
DEPDC4Q8N2C3 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC21.94■■□□□ 1.1
DEPDC4Q8N2C3 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC21.94■■□□□ 1.1
DEPDC4Q8N2C3 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
DEPDC4Q8N2C3 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
DEPDC4Q8N2C3 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
DEPDC4Q8N2C3 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC21.94■■□□□ 1.1
DEPDC4Q8N2C3 BRD4-212ENST00000630599 726 ntTSL 2 BASIC21.94■■□□□ 1.1
DEPDC4Q8N2C3 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC21.94■■□□□ 1.1
DEPDC4Q8N2C3 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
DEPDC4Q8N2C3 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
DEPDC4Q8N2C3 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC21.94■■□□□ 1.1
DEPDC4Q8N2C3 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
DEPDC4Q8N2C3 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC21.93■■□□□ 1.1
DEPDC4Q8N2C3 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC21.92■■□□□ 1.1
DEPDC4Q8N2C3 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC21.92■■□□□ 1.1
DEPDC4Q8N2C3 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC21.92■■□□□ 1.1
DEPDC4Q8N2C3 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
DEPDC4Q8N2C3 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC21.92■■□□□ 1.1
DEPDC4Q8N2C3 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
DEPDC4Q8N2C3 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC21.92■■□□□ 1.1
DEPDC4Q8N2C3 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC21.92■■□□□ 1.1
DEPDC4Q8N2C3 GPX1-201ENST00000419349 1106 ntBASIC21.92■■□□□ 1.1
DEPDC4Q8N2C3 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
DEPDC4Q8N2C3 AC148477.6-201ENST00000623746 465 ntBASIC21.92■■□□□ 1.1
DEPDC4Q8N2C3 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
DEPDC4Q8N2C3 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
DEPDC4Q8N2C3 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC21.92■■□□□ 1.1
DEPDC4Q8N2C3 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
DEPDC4Q8N2C3 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC21.91■■□□□ 1.1
DEPDC4Q8N2C3 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
DEPDC4Q8N2C3 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
DEPDC4Q8N2C3 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
DEPDC4Q8N2C3 EED-207ENST00000528180 1745 ntTSL 5 BASIC21.91■■□□□ 1.1
DEPDC4Q8N2C3 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
DEPDC4Q8N2C3 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC21.9■■□□□ 1.1
DEPDC4Q8N2C3 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC21.9■■□□□ 1.1
DEPDC4Q8N2C3 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
DEPDC4Q8N2C3 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
DEPDC4Q8N2C3 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
DEPDC4Q8N2C3 HES4-202ENST00000428771 1040 ntTSL 2 BASIC21.9■■□□□ 1.1
DEPDC4Q8N2C3 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC21.9■■□□□ 1.1
DEPDC4Q8N2C3 AP003733.4-201ENST00000623785 1697 ntBASIC21.9■■□□□ 1.1
DEPDC4Q8N2C3 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
DEPDC4Q8N2C3 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC21.9■■□□□ 1.1
DEPDC4Q8N2C3 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC21.9■■□□□ 1.1
DEPDC4Q8N2C3 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
DEPDC4Q8N2C3 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
DEPDC4Q8N2C3 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC21.89■■□□□ 1.1
DEPDC4Q8N2C3 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
DEPDC4Q8N2C3 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
DEPDC4Q8N2C3 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC21.89■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 13.2 ms